RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ITCHQ96J02 903 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 NSMCE3Q96MG7 304 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 FAM193BQ96PV7 902 aaPredicted RBP12.01□□□□□ -0.49
CLIP3-201ENST00000360535 ASB2Q96Q27 587 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 BDH2Q9BUT1 245 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 AIG1Q9NVV5 245 aa12.01□□□□□ -0.49
CLIP3-201ENST00000360535 FAM155AB1AL88 458 aaPredicted RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 ATP6V1G1O75348 118 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 VPS26AO75436 327 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 HLA-DPA1P20036 260 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 MTHFRP42898 656 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 HK3P52790 923 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 IL10RBQ08334 325 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 PTGR1Q14914 329 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 FAM171A1Q5VUB5 890 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 TBC1D21Q8IYX1 336 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 TMEM199Q8N511 208 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 OR6K2Q8NGY2 324 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 OR10A6Q8NH74 314 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 DUS3LQ96G46 650 aaKnown RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 SLC39A13Q96H72 371 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 SUSD3Q96L08 255 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 TRIM54Q9BYV2 358 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 AASSQ9UDR5 926 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 MYO16Q9Y6X6 1858 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 M0QZQ0 153 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 E2F6O75461 281 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 CTPS1P17812 591 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 ERVPABLB-1P60509 514 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 NFKB2Q00653 900 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 SEMG2Q02383 582 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 FOXD4Q12950 439 aaPredicted RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 PRKG2Q13237 762 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 LAPTM4AQ15012 233 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 AASDHQ4L235 1098 aaPredicted RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 SETMARQ53H47 684 aaPredicted RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 LETMD1Q6P1Q0 360 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 SPESP1Q6UW49 350 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 ZNF598Q86UK7 904 aaKnown RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 DTWD1Q8N5C7 304 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 OR56A4Q8NGH8 313 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 PROKR1Q8TCW9 393 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 ZC3H15Q8WU90 426 aaKnown RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 STON2Q8WXE9 905 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 CCDC97Q96F63 343 aaPredicted RBP12□□□□□ -0.49
CLIP3-201ENST00000360535 ZNF599Q96NL3 588 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 EGFL8Q99944 293 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 ZNHIT2Q9UHR6 403 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 MED16Q9Y2X0 877 aa12□□□□□ -0.49
CLIP3-201ENST00000360535 A0A0U1RQF3 1178 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SYCE1LA8MT33 242 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 TOR1BO14657 336 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 STX7O15400 261 aaKnown RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 DFNA5O60443 496 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SNAP91O60641 907 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 WISP3O95389 354 aaPredicted RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ESRRBO95718 433 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 NDST3O95803 873 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 CYP11A1P05108 521 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 FCGR1AP12314 374 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 IL2P60568 153 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 RPL38P63173 70 aaKnown RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 HMGCS1Q01581 520 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 CHRNB3Q05901 458 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ITGADQ13349 1161 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 RCAN2Q14206 197 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 MEP1AQ16819 746 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ACBD5Q5T8D3 534 aaPredicted RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SPRYD7Q5W111 196 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 GALNT18Q6P9A2 607 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ENPP6Q6UWR7 440 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ZNF554Q86TJ5 538 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 C1orf74Q96LT6 269 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 HCSTQ9UBK5 93 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PCTPQ9UKL6 214 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 C2orf81A6NN90 581 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ZBBXA8MT70 800 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 F5H5T6 163 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 TLR5O60602 858 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 MATN4O95460 622 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 UROSP10746 265 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 AP5B1Q2VPB7 878 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 MORN1Q5T089 497 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 GRAMD4Q6IC98 578 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PHACTR4Q8IZ21 702 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SFRP1Q8N474 314 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SDCCAG3Q96C92 435 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 FBXO44Q9H4M3 255 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SCUBE2Q9NQ36 999 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 RIC8BQ9NVN3 520 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 SCML2Q9UQR0 700 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ANGPTL3Q9Y5C1 460 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 ZFP37Q9Y6Q3 630 aaPredicted RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 TDRD15B5MCY1 1934 aaKnown RBP11.99□□□□□ -0.49
CLIP3-201ENST00000360535 DOCK4Q8N1I0 1966 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 TCRBV5S2A0A599 114 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 XYLBO75191 536 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 GSNP06396 782 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 AKR1A1P14550 325 aa11.99□□□□□ -0.49
CLIP3-201ENST00000360535 PKMP14618 531 aaKnown RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms