RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TMEM181Q9P2C4 612 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 SUCOQ9UBS9 1254 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CRLS1Q9UJA2 301 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CCDC160A6NGH7 325 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 KCNK10P57789 538 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 GAREM2Q75VX8 874 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 MTFMTQ96DP5 389 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 MYRFLQ96LU7 910 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 PRPF18Q99633 342 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 MRPL17Q9NRX2 175 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 TMEM39AQ9NV64 488 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CMTM6Q9NX76 183 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CD300AQ9UGN4 299 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CNOT6Q9ULM6 557 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 SH3BP1Q9Y3L3 701 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 TANC1Q9C0D5 1861 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 PDLIM1O00151 329 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 E2F3O00716 465 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 PGLSO95336 258 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 ESRRBO95718 433 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 HNF1BP35680 557 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CLCN7P51798 805 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 RHDQ02161 417 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 LMAN2Q12907 356 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 MTA1Q13330 715 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 CHRNA6Q15825 494 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 SLC44A4Q53GD3 710 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 UGT2A3Q6UWM9 527 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 DET1Q7L5Y6 550 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 ADGRG2Q8IZP9 1017 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 PIH1D2Q8WWB5 315 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 OVCA2Q8WZ82 227 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 ASB2Q96Q27 587 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 INTS7Q9NVH2 962 aaKnown RBP10.22□□□□□ -0.77
LIMA1-201ENST00000341247 RIMKLBQ9ULI2 386 aa10.22□□□□□ -0.77
LIMA1-201ENST00000341247 C7orf72A4D263 438 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 PTGER3P43115 390 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 CACNG1Q06432 222 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 NR6A1Q15406 480 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 PHKG1Q16816 387 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 OTOP2Q7RTS6 562 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 RALGPS2Q86X27 583 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 ZSWIM9Q86XI8 627 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 KCNJ9Q92806 393 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 LRRC58Q96CX6 371 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 IL26Q9NPH9 171 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 CD84Q9UIB8 345 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 ASB3Q9Y575 518 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 PLXNA4Q9HCM2 1894 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 FXYD1O00168 92 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 INPP4BO15327 924 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 KIF1CO43896 1103 aaKnown RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 PENKP01210 267 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 RPL10P27635 214 aaKnown RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 HMGCLP35914 325 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 DGKQP52824 942 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 AARS2Q5JTZ9 985 aaKnown RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 HMBOX1Q6NT76 420 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 SLC2A7Q6PXP3 512 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 SLC39A5Q6ZMH5 540 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 SLC39A11Q8N1S5 342 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 OR4F6Q8NGB9 312 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 SLC22A17Q8WUG5 538 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 CORO1BQ9BR76 489 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 IL21Q9HBE4 155 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 SDR39U1Q9NRG7 319 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-201ENST00000341247 ZNHIT2Q9UHR6 403 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 VPS9D1Q9Y2B5 631 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 ANGPTL3Q9Y5C1 460 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 OR51B4Q9Y5P0 310 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 GPR45Q9Y5Y3 372 aa10.21□□□□□ -0.77
LIMA1-201ENST00000341247 MTX2O75431 263 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ESR1P03372 595 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 UROSP10746 265 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 IDO1P14902 403 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 CSF2RAP15509 400 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 SLC6A2P23975 617 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 IL12AP29459 219 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 OXTRP30559 389 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ACADVLP49748 655 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 POM121L1PQ3SYA9 428 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 DGKKQ5KSL6 1271 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 TBCELQ5QJ74 424 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 TPGS2Q68CL5 300 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 RETSATQ6NUM9 610 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 DNAJC14Q6Y2X3 702 aaPredicted RBP10.21□□□□□ -0.78
LIMA1-201ENST00000341247 GOLGA7Q7Z5G4 137 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 RNF168Q8IYW5 571 aaPredicted RBP10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ADCY4Q8NFM4 1077 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 PBXIP1Q96AQ6 731 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ALG14Q96F25 216 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ASIC4Q96FT7 647 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 YME1L1Q96TA2 773 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 C2orf49Q9BVC5 232 aaPredicted RBP10.21□□□□□ -0.78
LIMA1-201ENST00000341247 CFHR5Q9BXR6 569 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 GRIP2Q9C0E4 1043 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 IPPKQ9H8X2 491 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 ZFP14Q9HCL3 533 aa10.21□□□□□ -0.78
LIMA1-201ENST00000341247 PRM3Q9NNZ6 103 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms