RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ENTPD4Q9Y227 616 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 PCDHB12Q9Y5F1 795 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 PSAT1Q9Y617 370 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MED1Q15648 1581 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 TRIM64CA6NLI5 447 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 CPNE3O75131 537 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 PRKAR1AP10644 381 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 PSMA1P25786 263 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 HOXD10P28358 340 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 CD52P31358 61 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 CYP2C18P33260 490 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SMAD3P84022 425 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 POTEHQ6S545 545 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 DLK2Q6UY11 383 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TMPRSS11BQ86T26 416 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 EGFL6Q8IUX8 553 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MAB21L3Q8N8X9 362 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 OR4A15Q8NGL6 344 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TMEM109Q9BVC6 243 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TMEM134Q9H6X4 195 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MAGEE1Q9HCI5 957 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 KRCC1Q9NPI7 259 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 GIN1Q9NXP7 522 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MTRRQ9UBK8 725 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ZDHHC2Q9UIJ5 367 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TBC1D24Q9ULP9 559 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ASF1AQ9Y294 204 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 CDC40O60508 579 aaKnown RBP eCLIP8.61□□□□□ -1.03
RTN3-202ENST00000339997 RNASEH1O60930 286 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 IGSF6O95976 241 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 PSKH1P11801 424 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TCEA1P23193 301 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 S100A1P23297 94 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SERPINA4P29622 427 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 XIAPP98170 497 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 DUSP4Q13115 394 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 VGLL4Q14135 290 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 KCNA10Q16322 511 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 CCSAPQ6IQ19 270 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 TMEM110Q86TL2 294 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 PIGUQ9H490 435 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 ELAC1Q9H777 363 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 LRTM1Q9HBL6 345 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 STARD7Q9NQZ5 370 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 MAGEL2Q9UJ55 1249 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SPATA31A5Q5VU36 1347 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SPATA31A7Q8IWB4 1347 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TNFRSF11BO00300 401 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 LDB2O43679 373 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 CD36P16671 472 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 UGT2B15P54855 530 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SCRN3Q0VDG4 424 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 NAE1Q13564 534 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 DPYSQ14117 519 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 PRKD1Q15139 912 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 RAET1GQ6H3X3 334 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TMPRSS11AQ6ZMR5 421 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 UBE2R2Q712K3 238 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 ADAMTSL2Q86TH1 951 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 UNC93AQ86WB7 457 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TTC29Q8NA56 475 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 PSD4Q8NDX1 1056 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 EEF1AKMT1Q8WVE0 214 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 ZNF516Q92618 1163 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 MRPL48Q96GC5 212 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 RPL10LQ96L21 214 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 DNAJC28Q9NX36 388 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 COQ3Q9NZJ6 369 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 IFT80Q9P2H3 777 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 STXBP5LQ9Y2K9 1186 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SPEF1Q9Y4P9 236 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 ADAMTS13Q76LX8 1427 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 A0A1W2PRG6 482 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 MYBPHLA2RUH7 354 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 H0YGN5 161 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TRAFD1O14545 582 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 GNB5O14775 395 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 CILPO75339 1184 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 DBIP07108 87 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 PDE12Q6L8Q7 609 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 DEPDC4Q8N2C3 294 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 SIDT2Q8NBJ9 832 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 C12orf43Q96C57 262 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 TWNKQ96RR1 684 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TDRD1Q9BXT4 1180 aaKnown RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 BHLHE41Q9C0J9 482 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 RNF38Q9H0F5 515 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 NFS1Q9Y697 457 aa8.61□□□□□ -1.03
RTN3-202ENST00000339997 TRPM3Q9HCF6 1732 aaPredicted RBP8.61□□□□□ -1.03
RTN3-202ENST00000339997 A0A1W2PQH9 124 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 YJEFN3A6XGL0 299 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 XPNPEP2O43895 674 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SORBS2O94875 1100 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 IL1BP01584 269 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 IFNA16P05015 189 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 IST1P53990 364 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 PHC1P78364 1004 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 OGDHQ02218 1023 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SRSF11Q05519 484 aaKnown RBP8.6□□□□□ -1.03
RTN3-202ENST00000339997 SYPL2Q5VXT5 272 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms