RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 GALNT1Q10472 559 aaPredicted RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 KRT72Q14CN4 511 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 ZNF284Q2VY69 593 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PREPLQ4J6C6 727 aaPredicted RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 HENMT1Q5T8I9 393 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 MTSS1LQ765P7 747 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 TREML1Q86YW5 311 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 MMAAQ8IVH4 418 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 MYO1HQ8N1T3 1032 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 TRAM1L1Q8N609 369 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PTCD3Q96EY7 689 aaKnown RBP13.22□□□□□ -0.29
HMGB1-202ENST00000339872 NSL1Q96IY1 281 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 MSLNLQ96KJ4 702 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 PANX3Q96QZ0 392 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 OR52B2Q96RD2 323 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 ZSCAN5AQ9BUG6 496 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 CCDC106Q9BWC9 280 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 TNFRSF12AQ9NP84 129 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 DYRK4Q9NR20 520 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 CD274Q9NZQ7 290 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 LMCD1Q9NZU5 365 aa13.22□□□□□ -0.29
HMGB1-202ENST00000339872 FADS2P1A8MWK0 482 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 CAPN14A8MX76 684 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 UBFD1O14562 309 aaKnown RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 SNX2O60749 519 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 SKAP2O75563 359 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 ENO1P06733 434 aaKnown RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 OR56A5P0C7T3 313 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 ADRB3P13945 408 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 NCF2P19878 526 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 EPHA3P29320 983 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 PSMD8P48556 350 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 HK3P52790 923 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 TTLL9Q3SXZ7 439 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 ACSBG2Q5FVE4 666 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 CHRDL2Q6WN34 429 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 NUDT18Q6ZVK8 323 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 TECPR1Q7Z6L1 1165 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 DSG4Q86SJ6 1040 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 ADAMTSL2Q86TH1 951 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 AFAP1L2Q8N4X5 818 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 SLC7A6OSQ96CW6 309 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 DCUN1D1Q96GG9 259 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 NSUN5Q96P11 429 aaKnown RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 TUBB6Q9BUF5 446 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 LRMDAQ9H2I8 198 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 FBRSL1Q9HCM7 1045 aaKnown RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 PRSS16Q9NQE7 514 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 NFKBIL1Q9UBC1 381 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-202ENST00000339872 CDYLQ9Y232 598 aa13.21□□□□□ -0.29
HMGB1-202ENST00000339872 CCDC189A1A4V9 331 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 RGSL1A5PLK6 1076 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 PRR5-ARHGAP8B1AHC4 643 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 C1QTNF3-AMACRE9PGA6 284 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 MAGEC1O60732 1142 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 ESRRAP11474 423 aaPredicted RBP13.21□□□□□ -0.3
HMGB1-202ENST00000339872 CALB2P22676 271 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 WASP42768 502 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 RASSF2P50749 326 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 ARHGAP8P85298 464 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 ELP6Q0PNE2 266 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 TGFBIQ15582 683 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 ACAD11Q709F0 780 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 AP2M1Q96CW1 435 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 SUN2Q9UH99 717 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 LNPEPQ9UIQ6 1025 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 MBD1Q9UIS9 605 aaPredicted RBP13.21□□□□□ -0.3
HMGB1-202ENST00000339872 COQ6Q9Y2Z9 468 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 MTCH2Q9Y6C9 303 aa13.21□□□□□ -0.3
HMGB1-202ENST00000339872 CFAP99D6REC4 459 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 PSMD11O00231 422 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 WNT9AO14904 365 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 KLK8O60259 260 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 HNRNPCL1O60812 293 aaKnown RBP13.2□□□□□ -0.3
HMGB1-202ENST00000339872 ATP1B2P14415 290 aaPredicted RBP13.2□□□□□ -0.3
HMGB1-202ENST00000339872 NQO1P15559 274 aaKnown RBP13.2□□□□□ -0.3
HMGB1-202ENST00000339872 GM2AP17900 193 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 AGTR2P50052 363 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 TBCCQ15814 346 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 SBSNQ6UWP8 590 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 CACUL1Q86Y37 369 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 CHPFQ8IZ52 775 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 SMRP1Q8NCR6 262 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 FAR2Q96K12 515 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 SLC40A1Q9NP59 571 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 ARHGEF3Q9NR81 526 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 KCTD5Q9NXV2 234 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 NUDT4Q9NZJ9 180 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 TMCO1Q9UM00 188 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 SORCS3Q9UPU3 1222 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 STON1Q9Y6Q2 735 aa13.2□□□□□ -0.3
HMGB1-202ENST00000339872 TRPC5OSA6NMA1 111 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 H0Y858 1186 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 STX16-NPEPL1H3BU86 382 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 STX16O14662 325 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 MSH3P20585 1137 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 CCR7P32248 378 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 HTR4Q13639 388 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 LSM12Q3MHD2 195 aaKnown RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ANKS6Q68DC2 871 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms