RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 PAQR3Q6TCH7 311 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 FAM151BQ6UXP7 276 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ARHGAP12Q8IWW6 846 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ATP6V0D2Q8N8Y2 350 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 GPR21Q99679 349 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 HEPHQ9BQS7 1158 aa12.55□□□□□ -0.4
RETREG3-201ENST00000309428 ZFP37Q9Y6Q3 630 aaPredicted RBP12.55□□□□□ -0.4
RETREG3-201ENST00000309428 RBM47A0AV96 593 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 GABRDO14764 452 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 ARPC2O15144 300 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 WDR47O94967 919 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CKMP06732 381 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 RHOCP08134 193 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CHRM5P08912 532 aaPredicted RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TTKP33981 857 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 SLC13A2Q13183 592 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 NAB1Q13506 487 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TAS1R1Q7RTX1 841 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 RNF180Q86T96 592 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 UBASH3BQ8TF42 649 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 ZHX1-C8orf76Q96EF9 292 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 FAM120BQ96EK7 910 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TPD52L3Q96J77 140 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CITED4Q96RK1 184 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 SMG9Q9H0W8 520 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TNKS2Q9H2K2 1166 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TPK1Q9H3S4 243 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TCAF2A6NFQ2 919 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 ADAM12O43184 909 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 GRID2O43424 1007 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 XPNPEP2O43895 674 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 FMO3P31513 532 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CAPGP40121 348 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 GDF5P43026 501 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 MAGEA3P43357 314 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 OXCT1P55809 520 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 DGUOKQ16854 277 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 PABPC1LQ4VXU2 614 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 MS4A13Q5J8X5 152 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TMEM236Q5W0B7 351 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 SLC44A2Q8IWA5 706 aaPredicted RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CLYBLQ8N0X4 340 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 BBS5Q8N3I7 341 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 RTL3Q8N8U3 475 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 SIDT2Q8NBJ9 832 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 RIC8BQ9NVN3 520 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 FAIMQ9NVQ4 179 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 COMMD8Q9NX08 183 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 A0A0U1RQF3 1178 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CD3EAPO15446 510 aaKnown RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 MBL2P11226 248 aaPredicted RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 TRIP4Q15650 581 aaPredicted RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 SLC22A9Q8IVM8 553 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 C11orf84Q9BUA3 381 aaPredicted RBP12.54□□□□□ -0.4
RETREG3-201ENST00000309428 CRISPLD1Q9H336 500 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 HSFX1Q9UBD0 423 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 FKBPLQ9UIM3 349 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 ARID2Q68CP9 1835 aa12.54□□□□□ -0.4
RETREG3-201ENST00000309428 RLFQ13129 1914 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PDZK1P1A8MUH7 402 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PFDN6O15212 129 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 LRATO95237 230 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 GSTT2P0CG29 244 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 GSTT2BP0CG30 244 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 AQP1P29972 269 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 ALDH7A1P49419 539 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 DGKQP52824 942 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 COPZ1P61923 177 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 CDK18Q07002 472 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PDCD4Q53EL6 469 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PTRHD1Q6GMV3 140 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 MRNIPQ6NTE8 343 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 MCFD2Q8NI22 146 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 RDH11Q8TC12 318 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 ITCHQ96J02 903 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PRRG3Q9BZD7 231 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 GIN1Q9NXP7 522 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 MUSKO15146 869 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 DIRAS1O95057 198 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 CPSF4O95639 269 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 NTRK1P04629 796 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 CNPP09543 421 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PRDX3P30048 256 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 RNF219Q5W0B1 726 aaPredicted RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 KCTD13Q8WZ19 329 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 GPR22Q99680 433 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 SCUBE2Q9NQ36 999 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 RCOR3Q9P2K3 495 aaPredicted RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 CAB39Q9Y376 341 aaPredicted RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 PNMA8CA0A1B0GUJ8 204 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 A6NL46 340 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 K7ERQ8 282 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 MTX2O75431 263 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 STAU1O95793 577 aaKnown RBP12.53□□□□□ -0.4
RETREG3-201ENST00000309428 THRBP10828 461 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 OXTRP30559 389 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 RGRP47804 291 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 GSK3BP49841 420 aa12.53□□□□□ -0.4
RETREG3-201ENST00000309428 ST13P50502 369 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms