RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 UGT1A1P22309 533 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A4P22310 534 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A3P35503 534 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 SLC30A6Q6NXT4 461 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PHC2Q8IXK0 858 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ELMO3Q96BJ8 720 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 AIF1LQ9BQI0 150 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ELAC1Q9H777 363 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A7Q9HAW7 530 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A10Q9HAW8 530 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 UGT1A8Q9HAW9 530 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 EQTNQ9NQ60 294 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PLK2Q9NYY3 685 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 FBXO9Q9UK97 447 aaPredicted RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TRPV2Q9Y5S1 764 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TRAV19A0A0A6YYK7 116 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ERP29P30040 261 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 AKT2P31751 481 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 AFF1P51825 1210 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CRY2Q49AN0 593 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ZC3H12AQ5D1E8 599 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 STYK1Q6J9G0 422 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PAMR1Q6UXH9 720 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PCDHB1Q9Y5F3 818 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PCDHGB7Q9Y5F8 929 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 C1QTNF3-AMACRE9PGA6 284 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 OR10H4Q8NGA5 316 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 FERD3LQ96RJ6 166 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 WDR55Q9H6Y2 383 aaPredicted RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PCDHGC3Q9UN70 934 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 DCLK1O15075 740 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CLDN9O95484 217 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 C17orf64Q86WR6 236 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PM20D2Q8IYS1 436 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 FSTL5Q8N475 847 aaPredicted RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 STOML3Q8TAV4 291 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 DNAJB3Q8WWF6 145 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 NXPE2Q96DL1 559 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 PRDM12Q9H4Q4 367 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TPGS1Q6ZTW0 290 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 S100PBPQ96BU1 408 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ZSWIM3Q96MP5 696 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 C2orf71A6NGG8 1288 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 HTR1BP28222 390 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CD83Q01151 205 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 MADCAM1Q13477 382 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CBX2Q14781 532 aaPredicted RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CMC1Q7Z7K0 106 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 DENND1CQ8IV53 801 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 NKD1Q969G9 470 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 C12orf43Q96C57 262 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 KCTD7Q96MP8 289 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 BUD23O43709 281 aaKnown RBP13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TPSB2P20231 275 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ACADVLP49748 655 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 FSTL1Q12841 308 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TPSAB1Q15661 275 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 AMIGO1Q86WK6 493 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 THAP6Q8TBB0 222 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 TRPV4Q9HBA0 871 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 ERVK-5Q9HDB9 667 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 COMMD3Q9UBI1 195 aa13.75□□□□□ -0.21
CSPG4-201ENST00000308508 CEP152O94986 1710 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ABCA6Q8N139 1617 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PDLIM1O00151 329 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 LGR5O75473 907 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PIAS1O75925 651 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 C22orf31O95567 290 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SLC9A3P48764 834 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ADAM15Q13444 863 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF782Q6ZMW2 699 aaPredicted RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 RASGEF1AQ8N9B8 481 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PCDH19Q8TAB3 1148 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PRRG4Q9BZD6 226 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 KCNQ5Q9NR82 932 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 MAP4K5Q9Y4K4 846 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 OR3A3P47888 321 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 OR3A2P47893 321 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 RAP1GAP2Q684P5 730 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 GRHL2Q6ISB3 625 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 MRPL45Q9BRJ2 306 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 RNF38Q9H0F5 515 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 DNAJB4Q9UDY4 337 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ISPDA4D126 451 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SLC33A1O00400 549 aaPredicted RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 FSCN2O14926 492 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SRCP12931 536 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SYCE2Q6PIF2 218 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 TMEM161BQ8NDZ6 487 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SETD6Q8TBK2 473 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 COPS8Q99627 209 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 METTL8Q9H825 291 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SSU72Q9NP77 194 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 CPS1P31327 1500 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 A0A1B0GVC2 190 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 CPSF4LA6NMK7 179 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ASLP04424 464 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 MARCKSL1P49006 195 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 CDH13P55290 713 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 FBXO43Q4G163 708 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms