RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TSGA13Q96PP4 275 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ACO2Q99798 780 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 SNRNP25Q9BV90 132 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 MRPL9Q9BYD2 267 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 CYP4F12Q9HCS2 524 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 NPAP1Q9NZP6 1156 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ARL5AQ9Y689 179 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MLYCDO95822 493 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MT-CO1P00395 513 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CSH1P0DML2 217 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CSH2P0DML3 217 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 HPGDP15428 266 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 PKNOX1P55347 436 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CCNA1P78396 465 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SKIV2LQ15477 1246 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 ZCCHC12Q6PEW1 402 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CRYBG2Q8N1P7 616 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SRFBP1Q8NEF9 429 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 KAT2AQ92830 837 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MARK4Q96L34 752 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 KLHL5Q96PQ7 755 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CST11Q9H112 138 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 COQ3Q9NZJ6 369 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SLC7A4O43246 635 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 SGTAO43765 313 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 ETS1P14921 441 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MYL9P24844 172 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 IDH2P48735 452 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 ACOT2P49753 483 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MTFR2Q6P444 385 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 MTSS1LQ765P7 747 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CCDC28AQ8IWP9 274 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 FAM47BQ8NA70 645 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 TEKT5Q96M29 485 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 HGH1Q9BTY7 390 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 APOBEC3GQ9HC16 384 aaKnown RBP6.36□□□□□ -1.39
VPS35-201ENST00000299138 ZIM2Q9NZV7 527 aa6.36□□□□□ -1.39
VPS35-201ENST00000299138 CIB4A0PJX0 185 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 NEDD8-MDP1E9PL57 170 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SRCP12931 536 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GTF2E2P29084 291 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 NDST1P52848 882 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TPI1P60174 286 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SLC14A2Q15849 920 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ATP6AP1Q15904 470 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PHKG1Q16816 387 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RNF44Q7L0R7 432 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 CNTN4Q8IWV2 1026 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TMEM86AQ8N2M4 240 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 EMC1Q8N766 993 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 C3orf58Q8NDZ4 430 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 C9orf43Q8TAL5 461 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 NEK7Q8TDX7 302 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 KCTD13Q8WZ19 329 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 C11orf24Q96F05 449 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 RDH8Q9NYR8 311 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PEX16Q9Y5Y5 336 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 OR6C70A6NIJ9 312 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TTC34A8MYJ7 566 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PRMT5O14744 637 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 CASC3O15234 703 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 UGT2B11O75310 529 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RASAL1O95294 804 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 IL1RNP18510 177 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 OXCT1P55809 520 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CAV3P56539 151 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GALNT3Q14435 633 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MYLK3Q32MK0 819 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 LSM12Q3MHD2 195 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 PTRHD1Q6GMV3 140 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 RASAL3Q86YV0 1011 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CARNMT1Q8N4J0 409 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CERS5Q8N5B7 392 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 NKAPQ8N5F7 415 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 TMIEQ8NEW7 156 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MCFD2Q8NI22 146 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 STOML3Q8TAV4 291 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SLC7A14Q8TBB6 771 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 WNT8BQ93098 351 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CHCHD6Q9BRQ6 235 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ADAMTS6Q9UKP5 1117 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 UGT2A1Q9Y4X1 527 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 OGNP20774 298 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 PRKACBP22694 351 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PPIBP23284 216 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 GRM5P41594 1212 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GLRBP48167 497 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RELAQ04206 551 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 LPCAT4Q643R3 524 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SLC39A4Q6P5W5 647 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 DEFB132Q7Z7B7 95 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 FAM20CQ8IXL6 584 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ADGRF2Q8IZF7 708 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 NSMCE3Q96MG7 304 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RSPH9Q9H1X1 276 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 CHORDC1Q9UHD1 332 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 ERGIC3Q9Y282 383 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 IGKV6D-21A0A0A0MT36 114 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms