RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 NEDD4LQ96PU5 975 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 RUBCNLQ9H714 662 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 MOV10Q9HCE1 1003 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 GTF2IRD1Q9UHL9 959 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SLC12A8A0AV02 714 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 FAM92AA1XBS5 289 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 NCF1BA6NI72 391 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 NCF1CA8MVU1 366 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 ZNF487B1APH4 448 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ERVH48-1M5A8F1 160 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SCO2O43819 266 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CRYZL1O95825 349 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 NCF1P14598 390 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 MATKP42679 507 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 DGKQP52824 942 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 KCNK10P57789 538 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 NRG1Q02297 640 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 CDC20Q12834 499 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 NBPF12Q5TAG4 269 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 AGAP9Q5VTM2 703 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 RAP1GAP2Q684P5 730 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CES5AQ6NT32 575 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 PRMT9Q6P2P2 845 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CLYBLQ8N0X4 340 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 IL17RDQ8NFM7 739 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 OR6F1Q8NGZ6 308 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.35□□□□□ -0.27
SKA3-201ENST00000298260 C12orf42Q96LP6 360 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SDR39U1Q9NRG7 319 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 GIMAP4Q9NUV9 329 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 HACL1Q9UJ83 578 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ZNF221Q9UK13 617 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 MIA3Q5JRA6 1907 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 A0A1W2PP18 115 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 PDZK1P1A8MUH7 402 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 DFFAO00273 331 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 CD36P16671 472 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TPI1P60174 286 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 MBTD1Q05BQ5 628 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 BST2Q10589 180 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 PAFAH1B3Q15102 231 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 GPR162Q16538 588 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TTC23Q5W5X9 447 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TTC23LQ6PF05 361 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 B3GNT8Q7Z7M8 397 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 ISCA2Q86U28 154 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 PEX5LQ8IYB4 626 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 MICU2Q8IYU8 434 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 HCAR2Q8TDS4 363 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 YIPF6Q96EC8 236 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 DEPDC7Q96QD5 511 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 DCSTAMPQ9H295 470 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 AMBNQ9NP70 447 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 TRMT13Q9NUP7 481 aaKnown RBP13.35□□□□□ -0.27
SKA3-201ENST00000298260 MRGBPQ9NV56 204 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 RNF181Q9P0P0 153 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 LIMD1Q9UGP4 676 aa13.35□□□□□ -0.27
SKA3-201ENST00000298260 AZIN1O14977 448 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 TXNP10599 105 aaKnown RBP13.34□□□□□ -0.27
SKA3-201ENST00000298260 SLC25A52Q3SY17 297 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 PRSS36Q5K4E3 855 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 PTRH1Q86Y79 214 aaKnown RBP13.34□□□□□ -0.27
SKA3-201ENST00000298260 GALNT12Q8IXK2 581 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 PHF10Q8WUB8 498 aaKnown RBP13.34□□□□□ -0.27
SKA3-201ENST00000298260 FZD8Q9H461 694 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 SP140LQ9H930 580 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 WDR6Q9NNW5 1121 aaKnown RBP13.34□□□□□ -0.27
SKA3-201ENST00000298260 PCDHB14Q9Y5E9 798 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 SCN4AP35499 1836 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 A0A0U1RQS6 177 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 EFCAB9A8MZ26 197 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 M0QX08 132 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 TFECO14948 347 aaPredicted RBP13.34□□□□□ -0.27
SKA3-201ENST00000298260 CYP7B1O75881 506 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 LBPP18428 481 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 GPLD1P80108 840 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 CHRNB3Q05901 458 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 MADCAM1Q13477 382 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 UGP2Q16851 508 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 PCID2Q5JVF3 399 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 IER5Q5VY09 327 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 DENND5AQ6IQ26 1287 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 C11orf74Q86VG3 221 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 PARP16Q8N5Y8 322 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 NATD1Q8N6N6 113 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 UBXN10Q96LJ8 280 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 TEKT5Q96M29 485 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 ERVK13-1Q9NX77 482 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 FBXL12Q9NXK8 326 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 GPR45Q9Y5Y3 372 aa13.34□□□□□ -0.27
SKA3-201ENST00000298260 ZNF646O15015 1829 aaPredicted RBP13.33□□□□□ -0.27
SKA3-201ENST00000298260 A0A087X1B8 175 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 LOC100506127A0A0U1RQW1 187 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 CLK1P49759 484 aaKnown RBP13.33□□□□□ -0.28
SKA3-201ENST00000298260 OR2B6P58173 313 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 RBP5P82980 135 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 PPP2R2BQ00005 443 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 TP53BP2Q13625 1128 aa13.33□□□□□ -0.28
SKA3-201ENST00000298260 PTPRCAPQ14761 206 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms