RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 GCNT1Q02742 428 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GRB14Q14449 540 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 C14orf28Q4W4Y0 310 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FAM162BQ5T6X4 162 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ARHGAP11AQ6P4F7 1023 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF782Q6ZMW2 699 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GTF3C2Q8WUA4 911 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 REEP4Q9H6H4 257 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KIF25Q9UIL4 384 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GGT7Q9UJ14 662 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LSM7Q9UK45 103 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZFR2Q9UPR6 939 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PLB1Q6P1J6 1458 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 AGR2O95994 175 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PCCAP05165 728 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GLI1P08151 1106 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 OR56A5P0C7T3 313 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 RAP2AP10114 183 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SOX9P48436 509 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF81P51508 661 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 NFE2Q16621 373 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TIGD6Q17RP2 521 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 COBLL1Q53SF7 1204 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ATXN7L2Q5T6C5 722 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TMEM179Q6ZVK1 233 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MAELQ96JY0 434 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF512BQ96KM6 892 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PLLPQ9Y342 182 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LAMB4A4D0S4 1761 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 HPRP00739 348 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CDH5P33151 784 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MTHFRP42898 656 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LIMK2P53671 638 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TRIM28Q13263 835 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 NAE1Q13564 534 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ALG10BQ5I7T1 473 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 N4BP2L1Q5TBK1 243 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LGMNQ99538 433 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SUGCTQ9HAC7 445 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FANCFQ9NPI8 374 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SEMA3GQ9NS98 782 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SNTG2Q9NY99 539 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GLTPQ9NZD2 209 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KLQ9UEF7 1012 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CSADQ9Y600 493 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TNRC6AQ8NDV7 1962 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DENRO43583 198 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CYP3A5P20815 502 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TGM4P49221 684 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MECP2P51608 486 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 BCAT1P54687 386 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KLHDC7AQ5VTJ3 777 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 METAP1DQ6UB28 335 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 C15orf52Q6ZUT6 534 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KCNMB4Q86W47 210 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ISOC1Q96CN7 298 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 LRRC3Q9BY71 257 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ACE2Q9BYF1 805 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 HCN3Q9P1Z3 774 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SAE1Q9UBE0 346 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DLC1Q96QB1 1528 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 AGAP5A6NIR3 686 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 IL2RBP14784 551 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF7P17097 686 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SEPHS1P49903 392 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CLCN5P51795 746 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 HIST2H3PS2Q5TEC6 136 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 KCTD8Q6ZWB6 473 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 RD3Q7Z3Z2 195 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CACUL1Q86Y37 369 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MARVELD2Q8N4S9 558 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MFSD8Q8NHS3 518 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SETD7Q8WTS6 366 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 SGCDQ92629 289 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MTG2Q9H4K7 406 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GPN2Q9H9Y4 310 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MTMR4Q9NYA4 1195 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 C5orf60A6NFR6 353 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DDX39AO00148 427 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 OR5F1O95221 314 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ETV3P41162 512 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 HK3P52790 923 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 DCDC1P59894 354 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 MTMR1Q13613 665 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GNMTQ14749 295 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ZNHIT3Q15649 155 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 GRK1Q15835 563 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 IQCCQ4KMZ1 466 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 TPRG1LQ5T0D9 272 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ANKRD22Q5VYY1 191 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 VSTM1Q6UX27 236 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 FLAD1Q8NFF5 587 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ENGASEQ8NFI3 743 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ABI2Q9NYB9 513 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 CA5BQ9Y2D0 317 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 POLR1DQ9Y2S0 133 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 AXIN2Q9Y2T1 843 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 ARHGEF28Q8N1W1 1705 aaKnown RBP4.8□□□□□ -1.64
CSMD3-201ENST00000297405 PCDH15Q96QU1 1955 aa4.8□□□□□ -1.64
CSMD3-201ENST00000297405 WNK3Q9BYP7 1800 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms