RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 DUSP6Q16828 381 aa11.75□□□□□ -0.53
SYNGAP1-201ENST00000293748 PABPC1LQ4VXU2 614 aaKnown RBP11.75□□□□□ -0.53
SYNGAP1-201ENST00000293748 DDI2Q5TDH0 399 aa11.75□□□□□ -0.53
SYNGAP1-201ENST00000293748 OTOP3Q7RTS5 596 aa11.75□□□□□ -0.53
SYNGAP1-201ENST00000293748 GATAD2AQ86YP4 633 aa11.75□□□□□ -0.53
SYNGAP1-201ENST00000293748 IRGMA1A4Y4 181 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CSH1P0DML2 217 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CSH2P0DML3 217 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ERVFC1P60507 584 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 RAB33AQ14088 237 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 C6orf52Q5T4I8 152 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 NEK5Q6P3R8 708 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CPSF7Q8N684 471 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZNF461Q8TAF7 563 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 HTRA1Q92743 480 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 RBM4BQ9BQ04 359 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 RBM4Q9BWF3 364 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TTYH1Q9H313 450 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZDHHC7Q9NXF8 308 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 GDAP2Q9NXN4 497 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 HCSTQ9UBK5 93 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 VWA7Q9Y334 891 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 MRPS23Q9Y3D9 190 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TFECO14948 347 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TEX28O15482 410 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 C1RP00736 705 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 MMP8P22894 467 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 RPS9P46781 194 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 AKR1D1P51857 326 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TUBA4AP68366 448 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 SOX4Q06945 474 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CCNIQ14094 377 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PTPRNQ16849 979 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 FAM20CQ8IXL6 584 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PGBD3Q8N328 593 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 WDR48Q8TAF3 677 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 SLC47A1Q96FL8 570 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CENPNQ96H22 339 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TEFMQ96QE5 360 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 IKZF4Q9H2S9 585 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TMEM138Q9NPI0 162 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 MARCH5Q9NX47 278 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 MKL2Q9ULH7 1088 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZNF232Q9UNY5 417 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 LYVE1Q9Y5Y7 322 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 IRAK3Q9Y616 596 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TTC3P53804 2025 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PGRMC2O15173 223 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 DNAJA2O60884 412 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 THRBP10828 461 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TCF4P15884 667 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PTPN2P17706 415 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 MPSTP25325 297 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PEX2P28328 305 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 NTSP30990 170 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PUDPQ08623 228 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 APTXQ7Z2E3 356 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 CCDC36Q8IYA8 594 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 SPOCK2Q92563 424 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TDRD1Q9BXT4 1180 aaKnown RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 GNPTGQ9UJJ9 305 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PSME2Q9UL46 239 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 STK25O00506 426 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 RFXANKO14593 260 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 SUV39H1O43463 412 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ATP6V1G1O75348 118 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ERCC2P18074 760 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 FECHP22830 423 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 TRIM40Q6P9F5 258 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZNF572Q7Z3I7 529 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 LGI2Q8N0V4 545 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZFP28Q8NHY6 868 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 PANX1Q96RD7 426 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 ZFP14Q9HCL3 533 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 AKAP7Q9P0M2 348 aaPredicted RBP11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 SLC9A8Q9Y2E8 581 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 COQ6Q9Y2Z9 468 aa11.74□□□□□ -0.53
SYNGAP1-201ENST00000293748 KPNA5O15131 536 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 PLOD3O60568 738 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 RNASEH1O60930 286 aaKnown RBP11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 CALCAP01258 141 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 CHRNGP07510 517 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 USP17L7P0C7H9 530 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 PRG2P13727 222 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 RPL17P18621 184 aaKnown RBP11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 MSX2P35548 267 aaPredicted RBP11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 CD86P42081 329 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 POLR2LP62875 67 aaKnown RBP11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 CYP4F2P78329 520 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 CYP4F3Q08477 520 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 PLCL1Q15111 1095 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 BHLHB9Q6PI77 547 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 VSTM1Q6UX27 236 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 GK5Q6ZS86 529 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 SMYD1Q8NB12 490 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 GRPEL2Q8TAA5 225 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 FUBP3Q96I24 572 aaKnown RBP eCLIP11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 PGLYRP2Q96PD5 576 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 OR52E6Q96RD3 313 aa11.73□□□□□ -0.53
SYNGAP1-201ENST00000293748 AASDHPPTQ9NRN7 309 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms