RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TPBGLP0DKB5 382 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 GM2AP17900 193 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 PRDX3P30048 256 aaKnown RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 FOXA1P55317 472 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 ELAVL3Q14576 367 aaKnown RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 SKIV2LQ15477 1246 aaKnown RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 LILRA3Q8N6C8 439 aaPredicted RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 KDM1BQ8NB78 822 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 DLG3Q92796 817 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 FOXJ1Q92949 421 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 ZDHHC3Q9NYG2 299 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 SERGEFQ9UGK8 458 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 STON1Q9Y6Q2 735 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 TMEM202A6NGA9 273 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 ARNTLO00327 626 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 IMPDH1P20839 514 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 CNTN1Q12860 1018 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 GPR33Q49SQ1 333 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 SPDYAQ5MJ70 313 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 UGT3A1Q6NUS8 523 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 CUZD1Q86UP6 607 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 VRK3Q8IV63 474 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 FBXO39Q8N4B4 442 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 KLK6Q92876 244 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 TFB2MQ9H5Q4 396 aaKnown RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 LOC100653049A0A140TA62 436 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 MATN2O00339 956 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 KRT34O76011 436 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 ADRB3P13945 408 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 PBLDP30039 288 aaPredicted RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 CCR7P32248 378 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 PPARGP37231 505 aaPredicted RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 ARL1P40616 181 aaPredicted RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 GDF5P43026 501 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 PHKG1Q16816 387 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 KIAA1211LQ6NV74 962 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 ERAP2Q6P179 960 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 GPSM1Q86YR5 675 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 NKAPQ8N5F7 415 aaKnown RBP16.28■□□□□ 0.2
USP4-201ENST00000265560 MSLNLQ96KJ4 702 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 GIMAP2Q9UG22 337 aa16.28■□□□□ 0.2
USP4-201ENST00000265560 CXorf51AA0A1B0GTR3 108 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 MID1O15344 667 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 DCXO43602 365 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 KERAO60938 352 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 UNC5CO95185 931 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 APODP05090 189 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 SLC26A3P40879 764 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 HERVK_113P63132 956 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 SH3BP2P78314 561 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 PRKAA1Q13131 559 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 EIF4HQ15056 248 aaKnown RBP16.27■□□□□ 0.2
USP4-201ENST00000265560 SEL1L3Q68CR1 1132 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 SMRP1Q8NCR6 262 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 UCMAQ8WVF2 138 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 PLEKHG4BQ96PX9 1271 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 CDK15Q96Q40 435 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 ERVK-6Q9BXR3 956 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 POPDC3Q9HBV1 291 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 THAP10Q9P2Z0 257 aaPredicted RBP16.27■□□□□ 0.2
USP4-201ENST00000265560 PCDHB1Q9Y5F3 818 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 VPS13AQ96RL7 3174 aa16.27■□□□□ 0.2
USP4-201ENST00000265560 RECQL5O94762 991 aaPredicted RBP16.27■□□□□ 0.19
USP4-201ENST00000265560 BMP8BP34820 402 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 GRIA2P42262 883 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 SKIV2L2P42285 1042 aaKnown RBP16.27■□□□□ 0.19
USP4-201ENST00000265560 NSG1P42857 185 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.27■□□□□ 0.19
USP4-201ENST00000265560 FRMD7Q6ZUT3 714 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 MID1IP1Q9NPA3 183 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 DYRK4Q9NR20 520 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 SUN2Q9UH99 717 aa16.27■□□□□ 0.19
USP4-201ENST00000265560 CTSCP53634 463 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 ADARP55265 1226 aaKnown RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 PON2Q15165 354 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 TGFBIQ15582 683 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 PPP1R3AQ16821 1122 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 EPGNQ6UW88 154 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 SCIMPQ6UWF3 145 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 ZBTB2Q8N680 514 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 CFAP61Q8NHU2 1237 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 EIF2B4Q9UI10 523 aaKnown RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 TIMM22Q9Y584 194 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 ATXN2Q99700 1313 aaKnown RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 AGAP14A8MT82 685 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 K7EQS6 105 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 HDAC3O15379 428 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 LZTS3O60299 673 aaPredicted RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 LSM12Q3MHD2 195 aaKnown RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 FRA10AC1Q70Z53 315 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 DPPA4Q7L190 304 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 PLCD3Q8N3E9 789 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 GBP7Q8N8V2 638 aaPredicted RBP16.26■□□□□ 0.19
USP4-201ENST00000265560 INPP5DQ92835 1189 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 PRKAB1Q9Y478 270 aa16.26■□□□□ 0.19
USP4-201ENST00000265560 A8MUI8 341 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 F8W8V4 182 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 C6P13671 934 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ZNF30P17039 623 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 P2RY2P41231 377 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms