RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HGH1Q9BTY7 390 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 CHID1Q9BWS9 393 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 TRIM15Q9C019 465 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 ADNPQ9H2P0 1102 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 NANOGQ9H9S0 305 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 EXD2Q9NVH0 621 aa9.96□□□□□ -0.82
LIG3-201ENST00000262327 TUBA8Q9NY65 449 aaPredicted RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 EIF2B4Q9UI10 523 aaKnown RBP9.96□□□□□ -0.82
LIG3-201ENST00000262327 RAMP2O60895 175 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 HSD17B1P14061 328 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 TCF3P15923 654 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 RFC2P35250 354 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 PTPRNQ16849 979 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SETMARQ53H47 684 aaPredicted RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 INTS11Q5TA45 600 aaKnown RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 MRNIPQ6NTE8 343 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 CCDC117Q8IWD4 279 aaPredicted RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 FAM126BQ8IXS8 530 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 EFHBQ8N7U6 833 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 MFSD2AQ8NA29 543 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 OR7D4Q8NG98 312 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 OR10Q1Q8NGQ4 319 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 GABPB2Q8TAK5 448 aaPredicted RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 SERPINB11Q96P15 392 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SLC52A3Q9NQ40 469 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SMPD3Q9NY59 655 aaPredicted RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 ANAPC2Q9UJX6 822 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 UTS2RQ9UKP6 389 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 MED16Q9Y2X0 877 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 PDE4DIPQ5VU43 2346 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 A0A0U1RQF3 1178 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 A0A1W2PP18 115 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SLC12A8A0AV02 714 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 GOLGA8CPA6NN73 597 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 BBIP1A8MTZ0 92 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 MAN1A2O60476 641 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SYNCRIPO60506 623 aaKnown RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 RASAL1O95294 804 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SELPP16109 830 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 IL7RP16871 459 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 MATN1P21941 496 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 HRH2P25021 359 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SHMT2P34897 504 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 RGRP47804 291 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 HTR6P50406 440 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 LCP2Q13094 533 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 ATP1A4Q13733 1029 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 C10orf120Q5SQS8 335 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 ANKS6Q68DC2 871 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 ABRAXAS1Q6UWZ7 409 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 ZC3H7AQ8IWR0 971 aaKnown RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 UMODL1-AS1Q8N2C9 162 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 FAM86B1Q8N7N1 296 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 SEPT8Q92599 483 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 CDKN2AIPNLQ96HQ2 116 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 FEM1CQ96JP0 617 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 AARSD1Q9BTE6 412 aaKnown RBP9.95□□□□□ -0.82
LIG3-201ENST00000262327 CCDC68Q9H2F9 335 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 ARMC7Q9H6L4 198 aa9.95□□□□□ -0.82
LIG3-201ENST00000262327 TCRBV5S2A0A599 114 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 NOBOXO60393 691 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 SNX2O60749 519 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 SLC22A3O75751 556 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 RPP40O75818 363 aaKnown RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 RSL1D1O76021 490 aaKnown RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 LDLRP01130 860 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 FGF4P08620 206 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 ITGB6P18564 788 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 RPL9P32969 192 aaKnown RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 CAPGP40121 348 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 ZFP36L2P47974 494 aaKnown RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 ATP4BP51164 291 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 NUP107P57740 925 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 NRG1Q02297 640 aaPredicted RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 GNA12Q03113 381 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 IMPG1Q17R60 797 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 MSANTD2Q6P1R3 559 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 STK32CQ86UX6 486 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 PIANPQ8IYJ0 282 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 PARP8Q8N3A8 854 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 PDZD8Q8NEN9 1154 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 ARMC5Q96C12 935 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 FANCEQ9HB96 536 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 PRDM5Q9NQX1 630 aaPredicted RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 FAIMQ9NVQ4 179 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 KIAA1522Q9P206 1035 aaPredicted RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 IFT80Q9P2H3 777 aaPredicted RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 ITM2BQ9Y287 266 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 LOC285095A0A1B0GVY8 99 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 PITPNM1O00562 1244 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 NDUFS3O75489 264 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 SERPINB7O75635 380 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 RHOQP17081 205 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 KCNQ1P51787 676 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 POLR2JP52435 117 aaKnown RBP9.94□□□□□ -0.82
LIG3-201ENST00000262327 STC1P52823 247 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 BNIP2Q12982 314 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 TMTC4Q5T4D3 741 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 GLYATQ6IB77 296 aa9.94□□□□□ -0.82
LIG3-201ENST00000262327 LRRC8DQ7L1W4 858 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms