RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 RAMP2O60895 175 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CDK14O94921 469 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 HLA-DQB2P05538 268 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 S100A3P33764 101 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 CD68P34810 354 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 ALDH3A2P51648 485 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 TECRLQ5HYJ1 363 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 NECAB2Q7Z6G3 386 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 ARMC8Q8IUR7 673 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 LZTR1Q8N653 840 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 Q8N9G6 341 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 KIFC1Q9BW19 673 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 RNF38Q9H0F5 515 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 POU2F3Q9UKI9 436 aa10.95□□□□□ -0.66
CLN3-244ENST00000636147 COL22A1Q8NFW1 1626 aaPredicted RBP10.95□□□□□ -0.66
CLN3-244ENST00000636147 ZBTB7AO95365 584 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SLC25A27O95847 323 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 C1QAP02745 245 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 AGXTP21549 392 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 OR1E1P30953 314 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 DAOAP59103 153 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 NCS1P62166 190 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SH3BP2P78314 561 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 KRR1Q13601 381 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 CPSF6Q16630 551 aaKnown RBP eCLIP10.94□□□□□ -0.66
CLN3-244ENST00000636147 ZFP69Q49AA0 526 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 KIAA0930Q6ICG6 404 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 PAQR3Q6TCH7 311 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SLC44A2Q8IWA5 706 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 CCDC117Q8IWD4 279 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 ADGRG5Q8IZF4 528 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SMARCD1Q96GM5 515 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 TSSK3Q96PN8 268 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 NPY6RQ99463 290 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 RNF39Q9H2S5 420 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 AGO3Q9H9G7 860 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 C8orf4Q9NR00 106 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 TMEM161AQ9NX61 479 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 TMEM181Q9P2C4 612 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 GIT1Q9Y2X7 761 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 FAM32AQ9Y421 112 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 SCN7AQ01118 1682 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ELOVL7A1L3X0 281 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 EFCAB9A8MZ26 197 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 LOC110117498-PIK3R3F6TDL0 507 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 THP07101 528 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 CAPN1P07384 714 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ABCB1P08183 1280 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 HLA-DPA1P20036 260 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 GABRB3P28472 473 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 FOXA1P55317 472 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 LILRA4P59901 499 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 KCNJ8Q15842 424 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 CRY1Q16526 586 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 FAM174BQ3ZCQ3 159 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SULT1C3Q6IMI6 304 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ZCCHC8Q6NZY4 707 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 KIAA0408Q6ZU52 694 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SCML4Q8N228 414 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 OR13C4Q8NGS5 318 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 LINGO1Q96FE5 620 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 MYRFLQ96LU7 910 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 HNRNPABQ99729 332 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 PRRG3Q9BZD7 231 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 REEP1Q9H902 201 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ZC4H2Q9NQZ6 224 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 KRT84Q9NSB2 600 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 DUS2Q9NX74 493 aaKnown RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 CPQQ9Y646 472 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 EFCAB10A6NFE3 127 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 A8MX80 341 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ADAM23O75077 832 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 C22orf31O95567 290 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 C1RP00736 705 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 LHX1P48742 406 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 RGS4P49798 205 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 PHC1P78364 1004 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SPCS2Q15005 226 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SLC36A3Q495N2 470 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ZNF678Q5SXM1 525 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 DENND5AQ6IQ26 1287 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 DCLRE1AQ6PJP8 1040 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 CLEC20AQ6ZU45 233 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 GLT6D1Q7Z4J2 308 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 OR4L1Q8NH43 312 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 SLCO4A1Q96BD0 722 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 CYP2S1Q96SQ9 504 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 TRIM62Q9BVG3 475 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 KATNAL1Q9BW62 490 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 PDP1Q9P0J1 537 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 SLAMF8Q9P0V8 285 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 ZNF221Q9UK13 617 aa10.94□□□□□ -0.66
CLN3-244ENST00000636147 PRG3Q9Y2Y8 225 aaPredicted RBP10.94□□□□□ -0.66
CLN3-244ENST00000636147 LOC100130705A0A1B0GUX0 176 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 A6NL46 340 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ADM5C9JUS6 153 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CNTN5O94779 1100 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 MLYCDO95822 493 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 GOT2P00505 430 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 PABPC1P11940 636 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms