RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ABCG8Q9H221 673 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 LRRC40Q9H9A6 602 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 POLR1BQ9H9Y6 1135 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 XAB2Q9HCS7 855 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 MRPL40Q9NQ50 206 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 CASS4Q9NQ75 786 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 PIH1D1Q9NWS0 290 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 MOSPD1Q9UJG1 213 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CHMP2BQ9UQN3 213 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 PCDHB1Q9Y5F3 818 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 LAMA5O15230 3695 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 TDRD6O60522 2096 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 ANKRD66B4E2M5 251 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 TMX2-CTNND1H3BSU7 103 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 NTN3O00634 580 aaPredicted RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 PSMD3O43242 534 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 RIPK2O43353 540 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 BRINP1O60477 761 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 PMPCBO75439 489 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 IVLP07476 585 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 MLNP12872 115 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 GLB1P16278 677 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 ADRA1AP35348 466 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 EIF2S3P41091 472 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 ELK3P41970 407 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 STC1P52823 247 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 WNT3AP56704 352 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 ERVPABLB-1P60509 514 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 ILF3Q12906 894 aaKnown RBP eCLIP12.54□□□□□ -0.4
PNKP-217ENST00000625216 MPP3Q13368 585 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 SLC14A2Q15849 920 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 TBC1D25Q3MII6 688 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 KCTD16Q68DU8 428 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 IGF2-ASQ6U949 168 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 LRRC69Q6ZNQ3 347 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 CEP128Q6ZU80 1094 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 TRMT10CQ7L0Y3 403 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 ZBED8Q8IZ13 594 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 PDIK1LQ8N165 341 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 KYQ8NBH2 561 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 IPMKQ8NFU5 416 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 UHMK1Q8TAS1 419 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 GPBAR1Q8TDU6 330 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 ZBTB9Q96C00 473 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 ZIM3Q96PE6 472 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 PPP1R2P1Q96PQ5 205 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 TBL1YQ9BQ87 522 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 GSDMCQ9BYG8 508 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 CARS2Q9HA77 564 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 SIRPGQ9P1W8 387 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 APPL1Q9UKG1 709 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 SLC17A4Q9Y2C5 497 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 AAR2Q9Y312 384 aaKnown RBP12.54□□□□□ -0.4
PNKP-217ENST00000625216 TEX264Q9Y6I9 313 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 SCN8AQ9UQD0 1980 aa12.54□□□□□ -0.4
PNKP-217ENST00000625216 GOLGA6CA6NDK9 693 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 GOLGA6BA6NDN3 693 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 ACSL3O95573 720 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 TTC4O95801 387 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 AGTP01019 485 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 GOLGA6DP0CG33 693 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 MGAT1P26572 445 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 MLLT3P42568 568 aaPredicted RBP12.53□□□□□ -0.4
PNKP-217ENST00000625216 CHRNA4P43681 627 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 SESN2P58004 480 aaPredicted RBP12.53□□□□□ -0.4
PNKP-217ENST00000625216 SPIDRQ14159 915 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 PTPRRQ15256 657 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 PCSK7Q16549 785 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 KYNUQ16719 465 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 QPCTQ16769 361 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 COL28A1Q2UY09 1125 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 C14orf28Q4W4Y0 310 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 DNAJC21Q5F1R6 531 aaKnown RBP12.53□□□□□ -0.4
PNKP-217ENST00000625216 DENND5AQ6IQ26 1287 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 C19orf48Q6RUI8 117 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 FBXO36Q8NEA4 188 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 LPCAT1Q8NF37 534 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 SCARF2Q96GP6 870 aaPredicted RBP12.53□□□□□ -0.4
PNKP-217ENST00000625216 SIGLEC10Q96LC7 697 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 SRPK1Q96SB4 655 aaKnown RBP12.53□□□□□ -0.4
PNKP-217ENST00000625216 DPEP2Q9H4A9 486 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 VIPAS39Q9H9C1 493 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 PLAC1Q9HBJ0 212 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 LRRC4CQ9HCJ2 640 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 SYBUQ9NX95 663 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 GOLGA6AQ9NYA3 693 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 PLAAQ9Y263 795 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 PCDHGA8Q9Y5G5 932 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 ENTPD2Q9Y5L3 495 aa12.53□□□□□ -0.4
PNKP-217ENST00000625216 ZW10O43264 779 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 ATP8B1O43520 1251 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 TLX3O43711 291 aaPredicted RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 NUDT21O43809 227 aaKnown RBP12.52□□□□□ -0.41
PNKP-217ENST00000625216 NOBOXO60393 691 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 CLDN7O95471 211 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 SOD1P00441 154 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 FUCA1P04066 466 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 SHBGP04278 402 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 MPOP05164 745 aa12.52□□□□□ -0.41
PNKP-217ENST00000625216 RBMS1P29558 406 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms