RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SNX24Q9Y343 169 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 CPED1A4D0V7 1026 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 AGRPO00253 132 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DNALI1O14645 258 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 CHUKO15111 745 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 GRID2O43424 1007 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 HYAL3O43820 417 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 GAS8O95995 478 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 KELP23276 732 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 PBLDP30039 288 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 PAFAH1B1P43034 410 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 MAGEA3P43357 314 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 SLC7A5Q01650 507 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DBN1Q16643 649 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 HS1BP3Q53T59 392 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 C6orf132Q5T0Z8 1188 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 SERPINA9Q86WD7 417 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 GALNT13Q8IUC8 556 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 NOA1Q8NC60 698 aaKnown RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DDHD1Q8NEL9 900 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 PPP1R2P1Q96PQ5 205 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DPH5Q9H2P9 285 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 KLC4Q9NSK0 619 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 KCTD5Q9NXV2 234 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 SLC17A6Q9P2U8 582 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 GPR34Q9UPC5 381 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 BOD1L1Q8NFC6 3051 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 ESYT3A0FGR9 886 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 PSMD3O43242 534 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SNX2O60749 519 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ANXA6P08133 673 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 FOXC1Q12948 553 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 FASTKD3Q14CZ7 662 aaKnown RBP13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ELOCQ15369 112 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 TRAPPC5Q8IUR0 188 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 RAVER1Q8IY67 606 aaKnown RBP13.3□□□□□ -0.28
LINC00540-202ENST00000616974 NXPE1Q8N323 547 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 STYXQ8WUJ0 223 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SIGLEC10Q96LC7 697 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SLC32A1Q9H598 525 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 VPS18Q9P253 973 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 CDC23Q9UJX2 597 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 WASF3Q9UPY6 502 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 WDR37Q9Y2I8 494 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 TRBV5-4A0A0C4DH59 114 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 HEATR9A2RTY3 570 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 H7C0S8 307 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 YKT6O15498 198 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF189O75820 626 aaPredicted RBP13.3□□□□□ -0.28
LINC00540-202ENST00000616974 BRAFP15056 766 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ADRA1DP25100 572 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 AKT1P31749 480 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 BLKP51451 505 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ITGA8P53708 1063 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ACVR1Q04771 509 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF789Q5FWF6 425 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 TMEM220Q6QAJ8 160 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 TAS2R42Q7RTR8 314 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SPDYE1Q8NFV5 336 aaPredicted RBP13.3□□□□□ -0.28
LINC00540-202ENST00000616974 OR6P1Q8NGX9 317 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 GRK7Q8WTQ7 553 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SRPK1Q96SB4 655 aaKnown RBP13.3□□□□□ -0.28
LINC00540-202ENST00000616974 CDH19Q9H159 772 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 OSGEPL1Q9H4B0 414 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 SMOXQ9NWM0 555 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 CRLS1Q9UJA2 301 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 DOLKQ9UPQ8 538 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 MRFAP1Q9Y605 127 aa13.3□□□□□ -0.28
LINC00540-202ENST00000616974 TNFSF14O43557 240 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 PIAS1O75925 651 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 SEC31AO94979 1220 aaKnown RBP13.29□□□□□ -0.28
LINC00540-202ENST00000616974 PSMA3P25788 255 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 NFE2L1Q14494 772 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 PCID2Q5JVF3 399 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 SNX20Q7Z614 316 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 GLRX5Q86SX6 157 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 PPIL6Q8IXY8 311 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 LKAAEAR1Q8TD35 194 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 RANBP9Q96S59 729 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 TRNAU1APQ9NX07 287 aaKnown RBP13.29□□□□□ -0.28
LINC00540-202ENST00000616974 KLK13Q9UKR3 277 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 PSMD13Q9UNM6 376 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 CSNK1G3Q9Y6M4 447 aa13.29□□□□□ -0.28
LINC00540-202ENST00000616974 A6NCN8 305 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 NEMP2A6NFY4 417 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PRR19A6NJB7 356 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 OR52A4PA6NMU1 304 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 IQCF5A8MTL0 148 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PPFIA2O75334 1257 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 DKK1O94907 266 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 VAPBO95292 243 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 CKMT1AP12532 417 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ACRV1P26436 265 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 DAB2P98082 770 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 DHX9Q08211 1270 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ILF3Q12906 894 aaKnown RBP eCLIP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 PDPK2PQ6A1A2 396 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 ZCCHC8Q6NZY4 707 aaKnown RBP13.28□□□□□ -0.28
LINC00540-202ENST00000616974 CASC4Q6P4E1 433 aa13.28□□□□□ -0.28
LINC00540-202ENST00000616974 TMPRSS9Q7Z410 1059 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms