RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 TAS2R42Q7RTR8 314 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 DGLUCYQ7Z3D6 616 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 LRRTM4Q86VH4 590 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SERPINA9Q86WD7 417 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 FAM46DQ8NEK8 389 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 OR6P1Q8NGX9 317 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 CCDC97Q96F63 343 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SIGLEC10Q96LC7 697 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 COPS8Q99627 209 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 TOR4AQ9NXH8 423 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SAMD15Q9P1V8 674 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 GPR34Q9UPC5 381 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 U3KQA8 63 aa16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 ARHGEF17Q96PE2 2063 aaPredicted RBP16.33■□□□□ 0.2
CCDC28A-202ENST00000611852 SPTBN2O15020 2390 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ZFC3H1O60293 1989 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 IGLV3-16A0A075B6K0 115 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 FAM237BA0A1B0GVD1 139 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 MAGEB16A2A368 324 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 OR2AG2A6NM03 316 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 KMOO15229 486 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 CKMT1AP12532 417 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ACP5P13686 325 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 CKMT2P17540 419 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 MSH3P20585 1137 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 KCNA4P22459 653 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ACTR1BP42025 376 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 CTSCP53634 463 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ACTR1AP61163 376 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 DNAJC3Q13217 504 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 GTF2H3Q13889 308 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 FNBP1LQ5T0N5 605 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 DUPD1Q68J44 220 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 C11orf96Q7Z7L8 435 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 TRAPPC5Q8IUR0 188 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 SLC35F3Q8IY50 421 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 OR4L1Q8NH43 312 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 TRIM56Q9BRZ2 755 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 DPEP2Q9H4A9 486 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 SPATS2LQ9NUQ6 558 aaKnown RBP16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ZDHHC3Q9NYG2 299 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 TAAR2Q9P1P5 351 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 ANAPC5Q9UJX4 755 aa16.32■□□□□ 0.2
CCDC28A-202ENST00000611852 RALBP11234 206 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 MYF5P13349 255 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 ARNTP27540 789 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 DBN1Q16643 649 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 MSS51Q4VC12 460 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 OGFOD3Q6PK18 319 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 TMEM135Q86UB9 458 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 SFTPA2Q8IWL1 248 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 ARL10Q8N8L6 244 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 PNPLA1Q8N8W4 532 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 MNS1Q8NEH6 495 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 NAT14Q8WUY8 206 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 HEXDCQ8WVB3 486 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 SGF29Q96ES7 293 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 DCUN1D1Q96GG9 259 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 ZNF514Q96K75 400 aaPredicted RBP16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 DPH5Q9H2P9 285 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 NCKIPSDQ9NZQ3 722 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 SIRPGQ9P1W8 387 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 SLC23A2Q9UGH3 650 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 KCNK6Q9Y257 313 aa16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 UTP11Q9Y3A2 253 aaKnown RBP16.31■□□□□ 0.2
CCDC28A-202ENST00000611852 CFAP99D6REC4 459 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 SGTAO43765 313 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 VAPBO95292 243 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 ATP1B2P14415 290 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 ZNF7P17097 686 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 DAB2P98082 770 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 DHX9Q08211 1270 aaKnown RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 INSCQ1MX18 579 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 PLA2G4EQ3MJ16 856 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 ANKRD20A4Q4UJ75 823 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 FASTKD1Q53R41 847 aaKnown RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 KIAA0930Q6ICG6 404 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 TMEM220Q6QAJ8 160 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 DET1Q7L5Y6 550 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 SLCO6A1Q86UG4 719 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 PDIK1LQ8N165 341 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 KYQ8NBH2 561 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 BBOF1Q8ND07 529 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 GPR156Q8NFN8 814 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 STAMBPL1Q96FJ0 436 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 PWWP2AQ96N64 755 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 FCRL3Q96P31 734 aaPredicted RBP16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 TIMM29Q9BSF4 260 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 LRRC1Q9BTT6 524 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 RAB17Q9H0T7 212 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 KLC4Q9NSK0 619 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 WHRNQ9P202 907 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 GULP1Q9UBP9 304 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 MAD1L1Q9Y6D9 718 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 RPS6KL1Q9Y6S9 549 aa16.3■□□□□ 0.2
CCDC28A-202ENST00000611852 CTAGE15A4D2H0 777 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 PRR19A6NJB7 356 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 B4DGG1 531 aa16.29■□□□□ 0.2
CCDC28A-202ENST00000611852 NDC80O14777 642 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms