RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 CSNK1G1Q9HCP0 422 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 TIMMDC1Q9NPL8 285 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ZDHHC7Q9NXF8 308 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PNMA8BQ9ULN7 279 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 FCF1Q9Y324 198 aaKnown RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 PCDHB1Q9Y5F3 818 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 DNAJC15Q9Y5T4 150 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 DYTNA2CJ06 578 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 LCHNA4D1U4 455 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 MGAT4DA6NG13 374 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 SLC28A1O00337 649 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PBLDP30039 288 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 ARRB2P32121 409 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 MTHFRP42898 656 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PRIM2P49643 509 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 AGTR2P50052 363 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 CCL23P55773 120 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 SH3BP2P78314 561 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PRKCZQ05513 592 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 CACNG1Q06432 222 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 GTF2H2Q13888 395 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ATXN7L2Q5T6C5 722 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 GTF2H2CQ6P1K8 395 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 CERS6Q6ZMG9 384 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 HJURPQ8NCD3 748 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 TRPV3Q8NET8 790 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 EEF1AKMT1Q8WVE0 214 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 MED8Q96G25 268 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 KLHL32Q96NJ5 620 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ZNF599Q96NL3 588 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ATP13A3Q9H7F0 1226 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ZNF556Q9HAH1 456 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PLGRKTQ9HBL7 147 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 HPS4Q9NQG7 708 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.6□□□□□ -1.03
LIG4-204ENST00000611712 GALNT8Q9NY28 637 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 NUDT4Q9NZJ9 180 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 SH3BP4Q9P0V3 963 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ACTR3BQ9P1U1 418 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 C3orf18Q9UK00 162 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 ZNF490Q9ULM2 529 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 DOCK5Q9H7D0 1870 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PRRC2BQ5JSZ5 2229 aaKnown RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 A0A1W2PP18 115 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 TMEM247A6NEH6 219 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 G3V2T6 193 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 HTRA2O43464 458 aaPredicted RBP8.6□□□□□ -1.03
LIG4-204ENST00000611712 EPOP01588 193 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 C1QAP02745 245 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 GSNP06396 782 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 CYP2A7P20853 494 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 WEE1P30291 646 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 IRF8Q02556 426 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 EPS8Q12929 822 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 XKR4Q5GH76 650 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 SYT12Q8IV01 421 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 HOMEZQ8IX15 550 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 LSMEM2Q8N112 164 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 RORBQ92753 470 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 UPF1Q92900 1129 aaKnown RBP eCLIP8.6□□□□□ -1.03
LIG4-204ENST00000611712 TPD52L3Q96J77 140 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PLEKHG4BQ96PX9 1271 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PTPN18Q99952 460 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 EMILIN2Q9BXX0 1053 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 TREX1Q9NSU2 369 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 PCDHGA7Q9Y5G6 932 aa8.6□□□□□ -1.03
LIG4-204ENST00000611712 FAM234BA2RU67 622 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 IQCF5A8MTL0 148 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 CLIC3O95833 236 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 ARCN1P48444 511 aaKnown RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 DGKQP52824 942 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 DGCR6Q14129 220 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 KCTD21Q4G0X4 260 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 KDELC1Q6UW63 502 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 PATL1Q86TB9 770 aaKnown RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 SERPINA9Q86WD7 417 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 IFNL1Q8IU54 200 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 CROCCP3Q8IVE0 287 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 OR10A6Q8NH74 314 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 PHF12Q96QT6 1004 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 COPS8Q99627 209 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 DERL2Q9GZP9 239 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 LIN28AQ9H9Z2 209 aaKnown RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 LRTM1Q9HBL6 345 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 HMX1Q9NP08 348 aaPredicted RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 C8orf4Q9NR00 106 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 SLC25A13Q9UJS0 675 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 SNX6Q9UNH7 406 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 ASB3Q9Y575 518 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 LTBP1Q14766 1721 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 HAS3O00219 553 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 CYP11A1P05108 521 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 ABCB1P08183 1280 aaPredicted RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 SOAT1P35610 550 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 CAPGP40121 348 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 RPL34P49207 117 aaKnown RBP8.59□□□□□ -1.03
LIG4-204ENST00000611712 ACSM2AQ08AH3 577 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 ACSM2BQ68CK6 577 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 USP45Q70EL2 814 aa8.59□□□□□ -1.03
LIG4-204ENST00000611712 BEND5Q7L4P6 421 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms