RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CCNCP24863 283 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PTPN4P29074 926 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TNNT3P45378 269 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 CAPZBP47756 277 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 MLLT10P55197 1068 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 GSDMDP57764 484 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 DCDC1P59894 354 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 UBE2IP63279 158 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 GTF2H3Q13889 308 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KRT81Q14533 505 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 IFI16Q16666 785 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 CA9Q16790 459 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 UGT8Q16880 541 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 INSCQ1MX18 579 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 FILIP1LQ4L180 1135 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 HENMT1Q5T8I9 393 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 CACHD1Q5VU97 1274 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PAPD7Q5XG87 772 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 ABRAXAS1Q6UWZ7 409 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 ARHGAP36Q6ZRI8 547 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 MAMDC2Q7Z304 686 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 POLNQ7Z5Q5 900 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TSPAN33Q86UF1 283 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 ZNF761Q86XN6 746 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 RHOT1Q8IXI2 618 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SLC34A3Q8N130 599 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SIDT2Q8NBJ9 832 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 GALNT6Q8NCL4 622 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 BRSK1Q8TDC3 778 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 ZFPM2Q8WW38 1151 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KLHL6Q8WZ60 621 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 CXorf40BQ96DE9 158 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TTC25Q96NG3 672 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TGM7Q96PF1 710 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 TSGA13Q96PP4 275 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 CSPG4P5Q96PW8 444 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PLEKHG4BQ96PX9 1271 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 MLPHQ9BV36 600 aaPredicted RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 TDRD1Q9BXT4 1180 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 NAT10Q9H0A0 1025 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 BRD8Q9H0E9 1235 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 OSGEPL1Q9H4B0 414 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 RUBCNLQ9H714 662 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 FANCEQ9HB96 536 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 PCDH9Q9HC56 1237 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SYTL2Q9HCH5 934 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 APMAPQ9HDC9 416 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 SLAMF7Q9NQ25 335 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 LHX9Q9NQ69 397 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KLC4Q9NSK0 619 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 GPATCH2LQ9NWQ4 482 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 IP6K2Q9UHH9 426 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 CD84Q9UIB8 345 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 KCNK6Q9Y257 313 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 ST14Q9Y5Y6 855 aa6.2□□□□□ -1.42
CUX1-220ENST00000607092 BZW2Q9Y6E2 419 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 SPENQ96T58 3664 aaKnown RBP6.2□□□□□ -1.42
CUX1-220ENST00000607092 CRYBG3Q68DQ2 2970 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 APCP25054 2843 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZFC3H1O60293 1989 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 ANKRD66B4E2M5 251 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 GOLGA6L22H0YM25 854 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MATN2O00339 956 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 CPNE3O75131 537 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 JCHAINP01591 159 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 FTLP02792 175 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 ATP1A1P05023 1023 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 ALPPP05187 535 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 PDHA1P08559 390 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZNF7P17097 686 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 TYRP1P17643 537 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 LPOP22079 712 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 AMPD1P23109 780 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 LEPRP48357 1165 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 SPINT3P49223 89 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 KLK7P49862 253 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MAXP61244 160 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 OGDHQ02218 1023 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TUBB3Q13509 450 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ELOAQ14241 798 aaKnown RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 PDK2Q15119 407 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 CCDC183Q5T5S1 534 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 SASS6Q6UVJ0 657 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MED25Q71SY5 747 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 IRF2BP2Q7Z5L9 587 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TRIM74Q86UV6 250 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TRAM1L1Q8N609 369 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 NIPA2Q8N8Q9 360 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TMEM102Q8N9M5 508 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 LPCAT1Q8NF37 534 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 DTX3LQ8TDB6 740 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 TM9SF4Q92544 642 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MAML1Q92585 1016 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 HSPH1Q92598 858 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZNF653Q96CK0 615 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 IQCDQ96DY2 449 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 MOCOSQ96EN8 888 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 SLC41A2Q96JW4 573 aa6.19□□□□□ -1.42
CUX1-220ENST00000607092 ZNF514Q96K75 400 aaPredicted RBP6.19□□□□□ -1.42
CUX1-220ENST00000607092 LRFN5Q96NI6 719 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms