RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 KCNJ13O60928 360 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 SRP72O76094 671 aaKnown RBP15.96■□□□□ 0.15
LSM4-206ENST00000600289 JUPP14923 745 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 TMEM115Q12893 351 aaPredicted RBP15.96■□□□□ 0.15
LSM4-206ENST00000600289 TARDBPQ13148 414 aaKnown RBP eCLIP15.96■□□□□ 0.15
LSM4-206ENST00000600289 NFATC2Q13469 925 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 LAMB3Q13751 1172 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 PTPRCAPQ14761 206 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 GPRC6AQ5T6X5 926 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 PCSK4Q6UW60 755 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 CHST15Q7LFX5 561 aaPredicted RBP15.96■□□□□ 0.15
LSM4-206ENST00000600289 ZNF547Q8IVP9 402 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 OR13C4Q8NGS5 318 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 ZNF398Q8TD17 642 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 STYXQ8WUJ0 223 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 ABCG4Q9H172 646 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 ARFGAP3Q9NP61 516 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 CASS4Q9NQ75 786 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 KCND1Q9NSA2 647 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 FKBPLQ9UIM3 349 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 RABGEF1Q9UJ41 708 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 PYCARDQ9ULZ3 195 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 KCTD3Q9Y597 815 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 RNF215Q9Y6U7 377 aa15.96■□□□□ 0.15
LSM4-206ENST00000600289 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 FAM149AA5PLN7 773 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 TRABD2BA6NFA1 517 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 E7EVH7 732 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 CDK14O94921 469 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ZSCAN5DPP0CG00 497 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ACP5P13686 325 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 SLC2A4P14672 509 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 TCP1P17987 556 aaKnown RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 ITPKBP27987 946 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 FASLGP48023 281 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 KCNJ1P48048 391 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 CLDN6P56747 220 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 GTF2H3Q13889 308 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 CLPPQ16740 277 aaPredicted RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 GPR33Q49SQ1 333 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ZNF648Q5T619 568 aaPredicted RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 GSTA5Q7RTV2 222 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 SNX20Q7Z614 316 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 SPRED1Q7Z699 444 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 C11orf96Q7Z7L8 435 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 PRUNE1Q86TP1 453 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 SFTPA2Q8IWL1 248 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 SFRP1Q8N474 314 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ARL14Q8N4G2 192 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 OR52K1Q8NGK4 314 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 COG1Q8WTW3 980 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 PEX13Q92968 403 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ULK4Q96C45 1275 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 MS4A14Q96JA4 679 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ZNF514Q96K75 400 aaPredicted RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 DCBLD2Q96PD2 775 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 NRSN2Q9GZP1 204 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 CLMPQ9H6B4 373 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 ASB8Q9H765 288 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 LRIT1Q9P2V4 623 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 PRKAB1Q9Y478 270 aa15.95■□□□□ 0.14
LSM4-206ENST00000600289 DNMT3AQ9Y6K1 912 aaPredicted RBP15.95■□□□□ 0.14
LSM4-206ENST00000600289 TRBV5-4A0A0C4DH59 114 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 HEATR9A2RTY3 570 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 KLHL33A6NCF5 533 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 OR5K4A6NMS3 321 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 AP3B1O00203 1094 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 GPR39O43194 453 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A9O60656 530 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 MTX2O75431 263 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 ECEL1O95672 775 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 GAS8O95995 478 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 APRTP07741 180 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 F3P13726 295 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 ZNF7P17097 686 aaPredicted RBP15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A6P19224 532 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 TPSB2P20231 275 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 ITGALP20701 1170 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A1P22309 533 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A4P22310 534 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 CA5AP35218 305 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A3P35503 534 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 UGT1A5P35504 534 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 MAGEA6P43360 314 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 GPR3P46089 330 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 LMAN1P49257 510 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 CDK16Q00536 496 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 SRSF1Q07955 248 aaKnown RBP eCLIP15.94■□□□□ 0.14
LSM4-206ENST00000600289 DMPKQ09013 629 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 POU6F1Q14863 301 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 RTP5Q14D33 572 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 TPSAB1Q15661 275 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 TTC27Q6P3X3 843 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 RBM44Q6ZP01 1051 aaKnown RBP15.94■□□□□ 0.14
LSM4-206ENST00000600289 TAB3Q8N5C8 712 aaPredicted RBP15.94■□□□□ 0.14
LSM4-206ENST00000600289 RASGEF1AQ8N9B8 481 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 DNAAF3Q8N9W5 541 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 AVL9Q8NBF6 648 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 GDAP1Q8TB36 358 aa15.94■□□□□ 0.14
LSM4-206ENST00000600289 DNAJC1Q96KC8 554 aaKnown RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms