RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 TGM7Q96PF1 710 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 TRIB3Q96RU7 358 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 POLR1EQ9GZS1 481 aaKnown RBP6.01□□□□□ -1.45
VRK3-220ENST00000600259 TWSG1Q9GZX9 223 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 BRD8Q9H0E9 1235 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 OR2AG1Q9H205 316 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 ACTL8Q9H568 366 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 PCDH9Q9HC56 1237 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 KLC4Q9NSK0 619 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.01□□□□□ -1.45
VRK3-220ENST00000600259 LMBRD1Q9NUN5 540 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 RBM22Q9NW64 420 aaKnown RBP eCLIP6.01□□□□□ -1.45
VRK3-220ENST00000600259 CUEDC1Q9NWM3 386 aaPredicted RBP6.01□□□□□ -1.45
VRK3-220ENST00000600259 NFKBIL1Q9UBC1 381 aaPredicted RBP6.01□□□□□ -1.45
VRK3-220ENST00000600259 DNPEPQ9ULA0 475 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 WDR37Q9Y2I8 494 aa6.01□□□□□ -1.45
VRK3-220ENST00000600259 PCDHGA9Q9Y5G4 932 aaKnown RBP6.01□□□□□ -1.45
VRK3-220ENST00000600259 POLEQ07864 2286 aa6□□□□□ -1.45
VRK3-220ENST00000600259 C1orf232A0A0U1RR37 186 aa6□□□□□ -1.45
VRK3-220ENST00000600259 LRRC53A6NM62 1247 aa6□□□□□ -1.45
VRK3-220ENST00000600259 OR52A4PA6NMU1 304 aa6□□□□□ -1.45
VRK3-220ENST00000600259 TCP11X1B4DZS4 312 aa6□□□□□ -1.45
VRK3-220ENST00000600259 GPR89AB7ZAQ6 455 aa6□□□□□ -1.45
VRK3-220ENST00000600259 KMOO15229 486 aa6□□□□□ -1.45
VRK3-220ENST00000600259 VPS4BO75351 444 aa6□□□□□ -1.45
VRK3-220ENST00000600259 SLC25A14O95258 325 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 CLDN1O95832 211 aa6□□□□□ -1.45
VRK3-220ENST00000600259 VIPP01282 170 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CAPN1P07384 714 aa6□□□□□ -1.45
VRK3-220ENST00000600259 TPM2P07951 284 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CCNYL3P0C7X3 344 aa6□□□□□ -1.45
VRK3-220ENST00000600259 GPR89BP0CG08 455 aa6□□□□□ -1.45
VRK3-220ENST00000600259 SKILP12757 684 aa6□□□□□ -1.45
VRK3-220ENST00000600259 AMD1P17707 334 aa6□□□□□ -1.45
VRK3-220ENST00000600259 LPOP22079 712 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 COL8A1P27658 744 aa6□□□□□ -1.45
VRK3-220ENST00000600259 PTPN4P29074 926 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CA5AP35218 305 aa6□□□□□ -1.45
VRK3-220ENST00000600259 SERPINB6P35237 376 aa6□□□□□ -1.45
VRK3-220ENST00000600259 NOP2P46087 812 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 CAPZBP47756 277 aa6□□□□□ -1.45
VRK3-220ENST00000600259 PPM1FP49593 454 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 ZNF165P49910 485 aa6□□□□□ -1.45
VRK3-220ENST00000600259 EPHB1P54762 984 aa6□□□□□ -1.45
VRK3-220ENST00000600259 DCDC1P59894 354 aa6□□□□□ -1.45
VRK3-220ENST00000600259 RPS18P62269 152 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 GBE1Q04446 702 aa6□□□□□ -1.45
VRK3-220ENST00000600259 ITKQ08881 620 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CHAF1BQ13112 559 aa6□□□□□ -1.45
VRK3-220ENST00000600259 IL10RAQ13651 578 aa6□□□□□ -1.45
VRK3-220ENST00000600259 DPYSL3Q14195 570 aa6□□□□□ -1.45
VRK3-220ENST00000600259 GPR18Q14330 331 aa6□□□□□ -1.45
VRK3-220ENST00000600259 PIGHQ14442 188 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 INPP5JQ15735 1006 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 IFI16Q16666 785 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 EIF2S3LQ2VIR3 472 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 PRR30Q53SZ7 412 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 ANKRD20A8PQ5CZ79 823 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CRB2Q5IJ48 1285 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CCDC183Q5T5S1 534 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CACHD1Q5VU97 1274 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CPZQ66K79 652 aa6□□□□□ -1.45
VRK3-220ENST00000600259 HGSNATQ68CP4 663 aa6□□□□□ -1.45
VRK3-220ENST00000600259 ZNF787Q6DD87 383 aa6□□□□□ -1.45
VRK3-220ENST00000600259 LCN10Q6JVE6 187 aa6□□□□□ -1.45
VRK3-220ENST00000600259 CLEC17AQ6ZS10 378 aa6□□□□□ -1.45
VRK3-220ENST00000600259 PPP1R3BQ86XI6 285 aa6□□□□□ -1.45
VRK3-220ENST00000600259 RASGRP3Q8IV61 690 aa6□□□□□ -1.45
VRK3-220ENST00000600259 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6□□□□□ -1.45
VRK3-220ENST00000600259 PQLC3Q8N755 202 aa6□□□□□ -1.45
VRK3-220ENST00000600259 RBMXL3Q8N7X1 1067 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 AVL9Q8NBF6 648 aa6□□□□□ -1.45
VRK3-220ENST00000600259 SLC38A9Q8NBW4 561 aa6□□□□□ -1.45
VRK3-220ENST00000600259 LPCAT1Q8NF37 534 aa6□□□□□ -1.45
VRK3-220ENST00000600259 NSMCE1Q8WV22 266 aa6□□□□□ -1.45
VRK3-220ENST00000600259 THAP4Q8WY91 577 aa6□□□□□ -1.45
VRK3-220ENST00000600259 GLYATL1Q969I3 302 aa6□□□□□ -1.45
VRK3-220ENST00000600259 ZNF653Q96CK0 615 aa6□□□□□ -1.45
VRK3-220ENST00000600259 FAF2Q96CS3 445 aa6□□□□□ -1.45
VRK3-220ENST00000600259 STAMBPL1Q96FJ0 436 aa6□□□□□ -1.45
VRK3-220ENST00000600259 TCTN2Q96GX1 697 aa6□□□□□ -1.45
VRK3-220ENST00000600259 TIMM29Q9BSF4 260 aa6□□□□□ -1.45
VRK3-220ENST00000600259 MLPHQ9BV36 600 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 GPR87Q9BY21 358 aa6□□□□□ -1.45
VRK3-220ENST00000600259 STN1Q9H668 368 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 PKD2L2Q9NZM6 624 aa6□□□□□ -1.45
VRK3-220ENST00000600259 RCOR3Q9P2K3 495 aaPredicted RBP6□□□□□ -1.45
VRK3-220ENST00000600259 MYO1AQ9UBC5 1043 aa6□□□□□ -1.45
VRK3-220ENST00000600259 LNPEPQ9UIQ6 1025 aa6□□□□□ -1.45
VRK3-220ENST00000600259 VPS4AQ9UN37 437 aa6□□□□□ -1.45
VRK3-220ENST00000600259 FARSAQ9Y285 508 aaKnown RBP6□□□□□ -1.45
VRK3-220ENST00000600259 SCINQ9Y6U3 715 aa6□□□□□ -1.45
VRK3-220ENST00000600259 POLQO75417 2590 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 SEC16AO15027 2179 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 AURKAO14965 403 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 VEGFDO43915 354 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 MTX2O75431 263 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 DDAH2O95865 285 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 LDLRP01130 860 aa5.99□□□□□ -1.45
VRK3-220ENST00000600259 JCHAINP01591 159 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms