RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZNF730Q6ZMV8 503 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 C12orf29Q8N999 325 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 DNAJC19Q96DA6 116 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 HOPXQ9BPY8 73 aaPredicted RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 RHOBTB2Q9BYZ6 727 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 XPR1Q9UBH6 696 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 LINC00854A0A1B0GVQ3 168 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 ECT2LQ008S8 904 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 C2orf80Q0P641 193 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 TMEM44Q2T9K0 475 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 KLHL12Q53G59 568 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 IZUMO2Q6UXV1 221 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 PCDH20Q8N6Y1 951 aaKnown RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 SLC9A6Q92581 669 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 TDP1Q9NUW8 608 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 IL36AQ9UHA7 158 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 KLF15Q9UIH9 416 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 TFR2Q9UP52 801 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 LTBP3Q9NS15 1303 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 POLR1AO95602 1720 aaPredicted RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 LAMTOR5O43504 91 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 RSL1D1O76021 490 aaKnown RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 DRG2P55039 364 aaKnown RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 PRKD1Q15139 912 aaPredicted RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 NLGN2Q8NFZ4 835 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 OR2AJ1Q8NGZ0 328 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 MAGEE2Q8TD90 523 aaPredicted RBP20.3■□□□□ 0.84
UPF1-207ENST00000599848 NMUR1Q9HB89 426 aa20.3■□□□□ 0.84
UPF1-207ENST00000599848 TISP43B9A030 160 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 PGRMC2O15173 223 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 GJB6O95452 261 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SAGP10523 405 aaPredicted RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 CAPGP40121 348 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SLC29A4Q7RTT9 530 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 ZNF490Q9ULM2 529 aaPredicted RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 FAM92AA1XBS5 289 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 KIF1CO43896 1103 aaKnown RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 ZNF823P16415 610 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 GSSP48637 474 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 LILRA4P59901 499 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 CYP4F2P78329 520 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 CCINQ13939 588 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SH3RF1Q7Z6J0 888 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 OR52K2Q8NGK3 314 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 RNF31Q96EP0 1072 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 DEPDC5O75140 1603 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SMNDC1O75940 238 aaKnown RBP eCLIP20.29■□□□□ 0.84
UPF1-207ENST00000599848 KLHL18O94889 574 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 ALPIP09923 528 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 ITPKAP23677 461 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SLC7A1P30825 629 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 KHKP50053 298 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 PSME3P61289 254 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 NOMO1Q15155 1222 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 TAF1AQ15573 450 aaPredicted RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 RNF43Q68DV7 783 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 OSBPL2Q9H1P3 480 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 ACSS3Q9H6R3 686 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 TRMT13Q9NUP7 481 aaKnown RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 KPNA4O00629 521 aaPredicted RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 DLG2Q15700 870 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SLC9B1Q4ZJI4 515 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 PLEKHA7Q6IQ23 1121 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 GDPD5Q8WTR4 605 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 KIDINS220Q9ULH0 1771 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 hCG_2014768A0A024R1R8 64 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 TRBV23OR9-2A0A075B6M9 112 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 ALDH4A1P30038 563 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 OLR1P78380 273 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 AUHQ13825 339 aaKnown RBP20.29■□□□□ 0.84
UPF1-207ENST00000599848 UGCGQ16739 394 aa20.29■□□□□ 0.84
UPF1-207ENST00000599848 SLIT3O75094 1523 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 H0YJX3 145 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 TNFRSF10BO14763 440 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 PTX3P26022 381 aaPredicted RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 SLC34A1Q06495 639 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 HKDC1Q2TB90 917 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 SH3D19Q5HYK7 790 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 ENPP7Q6UWV6 458 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 DNAJB8Q8NHS0 232 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 FAM83CQ9BQN1 747 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 TDRD1Q9BXT4 1180 aaKnown RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 SLC32A1Q9H598 525 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 IKZF2Q9UKS7 526 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 CLCA3PQ9Y6N3 262 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 A0A1W2PQ72 361 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 INPPL1O15357 1258 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 IFNA6P05013 189 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 ITPRIPL2Q3MIP1 535 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 PURBQ96QR8 312 aaKnown RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 CARS2Q9HA77 564 aaKnown RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 FAM237BA0A1B0GVD1 139 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 DNM1LO00429 736 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 GNAZP19086 355 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 AMZ1Q400G9 498 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 CYP2R1Q6VVX0 501 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 RAD9AQ99638 391 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 ZSCAN5AQ9BUG6 496 aa20.28■□□□□ 0.84
UPF1-207ENST00000599848 ZNF717Q9BY31 904 aaPredicted RBP20.28■□□□□ 0.84
UPF1-207ENST00000599848 SNX15Q9NRS6 342 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms