RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CDK14O94921 469 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 TRIM16O95361 564 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 GP1BAP07359 652 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 ACP5P13686 325 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 MGAT1P26572 445 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 ACTR1BP42025 376 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 SESN2P58004 480 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 ACTR1AP61163 376 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 DAB2P98082 770 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 INSM1Q01101 510 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 ZNF658BQ4V348 819 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 PCID2Q5JVF3 399 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 CRTC3Q6UUV7 619 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 EFL1Q7Z2Z2 1120 aaKnown RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 LRRTM4Q86VH4 590 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 JAMLQ86YT9 394 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 KLHL7Q8IXQ5 586 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 IFI44Q8TCB0 444 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 SGSM3Q96HU1 749 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 C16orf45Q96MC5 204 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 SERPINB12Q96P63 405 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 TIMM29Q9BSF4 260 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 TMEM121BQ9BXQ6 578 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 IL22Q9GZX6 179 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 NCKIPSDQ9NZQ3 722 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 KLK13Q9UKR3 277 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 PADI4Q9UM07 663 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 KCNK6Q9Y257 313 aa19.23■□□□□ 0.67
SHKBP1-221ENST00000599833 B4DGG1 531 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 DNALI1O14645 258 aaPredicted RBP19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 GAS8O95995 478 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 ACRV1P26436 265 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 NPY2RP49146 381 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 MAZP56270 477 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 SEMA3AQ14563 771 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 SKIDA1Q1XH10 827 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 GPR33Q49SQ1 333 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 C14orf28Q4W4Y0 310 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 CDCP2Q5VXM1 449 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 TMPRSS7Q7RTY8 843 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 ZNF438Q7Z4V0 828 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 SERPINA9Q86WD7 417 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 SPATA4Q8NEY3 305 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 ZDHHC1Q8WTX9 485 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 HDAC10Q969S8 669 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 TRIM56Q9BRZ2 755 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 MRM3Q9HC36 420 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 DOLKQ9UPQ8 538 aa19.22■□□□□ 0.67
SHKBP1-221ENST00000599833 KMOO15229 486 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 TTI1O43156 1089 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 GOT2P00505 430 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 MLNP12872 115 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 BRAFP15056 766 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 ZNF7P17097 686 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 ITGALP20701 1170 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 NMBRP28336 390 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 CACNG1Q06432 222 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 DMPKQ09013 629 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 NR1D2Q14995 579 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 DBN1Q16643 649 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 PLA2G4EQ3MJ16 856 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 BCL7AQ4VC05 210 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 FAM83HQ6ZRV2 1179 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 MARCH9Q86YJ5 346 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 SCG3Q8WXD2 468 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 ULK4Q96C45 1275 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 TRIM51Q9BSJ1 452 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 SCNM1Q9BWG6 230 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 DPEP2Q9H4A9 486 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 SCHIP1Q9P0W5 487 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 SOX13Q9UN79 622 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 RNF215Q9Y6U7 377 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 UNC13CQ8NB66 2214 aa19.21■□□□□ 0.67
SHKBP1-221ENST00000599833 PAFAH1B1P43034 410 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 DUSP3P51452 185 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 FOXK2Q01167 660 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 DR1Q01658 176 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 PPP1R7Q15435 360 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 TMEM220Q6QAJ8 160 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SYDE1Q6ZW31 735 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 NLRP9Q7RTR0 991 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 PPIL6Q8IXY8 311 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SFRP1Q8N474 314 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 ARL14Q8N4G2 192 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 BEND7Q8N7W2 519 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 PPHLN1Q8NEY8 458 aaKnown RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 GDAP1Q8TB36 358 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SLC37A2Q8TED4 501 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 GLMNQ92990 594 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 CCDC74AQ96AQ1 378 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 MFSD3Q96ES6 412 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SGF29Q96ES7 293 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SIGLEC10Q96LC7 697 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 LINC00615Q96LM1 132 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 KLC4Q9NSK0 619 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 ZDHHC3Q9NYG2 299 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 MARCH4Q9P2E8 410 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 CRLS1Q9UJA2 301 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 SLC30A1Q9Y6M5 507 aa19.2■□□□□ 0.66
SHKBP1-221ENST00000599833 CFAP47Q6ZTR5 3102 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms