RNA–Protein interactions for RNA: ENST00000598808.5

IRF3-221, Transcript of interferon regulatory factor 3, human

TSL 5 BASIC

Gene IRF3, Length 1,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-221	ENST00000598808	PUM1	Q14671	1186 aa	Known RBP eCLIP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	SMAD1	Q15797	465 aa	Known RBP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	PLA2G4E	Q3MJ16	856 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	GPRC6A	Q5T6X5	926 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	HIBCH	Q6NVY1	386 aa	Predicted RBP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	TAF8	Q7Z7C8	310 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	CAND1	Q86VP6	1230 aa	Known RBP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	MPP5	Q8N3R9	675 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	FSTL5	Q8N475	847 aa	Predicted RBP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	CDKN2AIPNL	Q96HQ2	116 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	OR2M4	Q96R27	311 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	ZCCHC2	Q9C0B9	1178 aa	Known RBP	19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	TMEM168	Q9H0V1	697 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	VPS18	Q9P253	973 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	ATXN10	Q9UBB4	475 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	FTSJ1	Q9UET6	329 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	DGKB	Q9Y6T7	804 aa		19.89	■□□□□ 0.77
IRF3-221	ENST00000598808	CABIN1	Q9Y6J0	2220 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	MLN	P12872	115 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	NOVA1	P51513	510 aa	Known RBP	19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	ARSD	P51689	593 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	ILF3	Q12906	894 aa	Known RBP eCLIP	19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	LDLRAP1	Q5SW96	308 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	AFTPH	Q6ULP2	937 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	CES3	Q6UWW8	571 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	DET1	Q7L5Y6	550 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	SNX20	Q7Z614	316 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	HOOK3	Q86VS8	718 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	GKN2	Q86XP6	184 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	SLC25A45	Q8N413	288 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	UBLCP1	Q8WVY7	318 aa	Predicted RBP	19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	HDAC10	Q969S8	669 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	19.88	■□□□□ 0.77	6e-6	■■□□□ 14.1
IRF3-221	ENST00000598808	ULK4	Q96C45	1275 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	DCUN1D1	Q96GG9	259 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	ZNF778	Q96MU6	729 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	TRIM39	Q9HCM9	518 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	PLAA	Q9Y263	795 aa		19.88	■□□□□ 0.77
IRF3-221	ENST00000598808	CCDC162P	A2VCL2	907 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	SDR42E2	A6NKP2	422 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	CDK14	O94921	469 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	IVL	P07476	585 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	PRSS56	P0CW18	603 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	ZNF8	P17098	575 aa	Predicted RBP	19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	XIAP	P98170	497 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	CACNG1	Q06432	222 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	UAP1	Q16222	522 aa	Predicted RBP	19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	CCDC157	Q569K6	752 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	DNAJC21	Q5F1R6	531 aa	Known RBP	19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	CHST15	Q7LFX5	561 aa	Predicted RBP	19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	ADGRG6	Q86SQ4	1221 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	TRAPPC5	Q8IUR0	188 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	OR13J1	Q8NGT2	312 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	SIRPG	Q9P1W8	387 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	TMPRSS11E	Q9UL52	423 aa		19.87	■□□□□ 0.77
IRF3-221	ENST00000598808	TP73	O15350	636 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	GOT2	P00505	430 aa	Known RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	ACP5	P13686	325 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	NMBR	P28336	390 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	CA5A	P35218	305 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	BBS9	Q3SYG4	887 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	KHDC1	Q4VXA5	237 aa	Known RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	PSAPL1	Q6NUJ1	521 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SLC30A9	Q6PML9	568 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	CCL4L1	Q8NHW4	92 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SCG3	Q8WXD2	468 aa	Known RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	ZNF669	Q96BR6	464 aa	Predicted RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	GSDMC	Q9BYG8	508 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	CLPB	Q9H078	707 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SMOX	Q9NWM0	555 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	PCOLCE2	Q9UKZ9	415 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SOX13	Q9UN79	622 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	GRID2	O43424	1007 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SIGLEC6	O43699	453 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	VEGFD	O43915	354 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	NUAK1	O60285	661 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	DNAJC6	O75061	913 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	FUCA1	P04066	466 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	RALB	P11234	206 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	AK4	P27144	223 aa	Predicted RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	CDKN1C	P49918	316 aa	Predicted RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	DAB2	P98082	770 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	TMEM115	Q12893	351 aa	Predicted RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	INSC	Q1MX18	579 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	PYCR3	Q53H96	274 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	FASTKD1	Q53R41	847 aa	Known RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	KANSL1	Q7Z3B3	1105 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	SERPINA9	Q86WD7	417 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	NXPE1	Q8N323	547 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	DDHD1	Q8NEL9	900 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	DTX3L	Q8TDB6	740 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	CNDP2	Q96KP4	475 aa	Known RBP	19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	COPS8	Q99627	209 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	C19orf43	Q9BQ61	176 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	TMEM109	Q9BVC6	243 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	DUSP23	Q9BVJ7	150 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	OSGEPL1	Q9H4B0	414 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	RMI1	Q9H9A7	625 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	NLGN3	Q9NZ94	848 aa		19.86	■□□□□ 0.77
IRF3-221	ENST00000598808	PLEKHM1	Q9Y4G2	1056 aa		19.86	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms