RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 FBXO9Q9UK97 447 aaPredicted RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 ASB1Q9Y576 335 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 PCDHGC4Q9Y5F7 938 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 AQP12BA6NM10 295 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 CCT8P50990 548 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 MS4A13Q5J8X5 152 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 FRA10AC1Q70Z53 315 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 AQP12AQ8IXF9 295 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 ABI1Q8IZP0 508 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 MYRFLQ96LU7 910 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 SLC30A3Q99726 388 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 BEGAINQ9BUH8 593 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 VPS45Q9NRW7 570 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 POLR3BQ9NW08 1133 aaPredicted RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 COQ6Q9Y2Z9 468 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 WDR90Q96KV7 1748 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 MOXD2PA6NHM9 499 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 A8MU76 341 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 CACNG3O60359 315 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 BMP10O95393 424 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 OXSR1O95747 527 aaPredicted RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 CYP2C18P33260 490 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 ZNF135P52742 658 aaPredicted RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 TUBA4AP68366 448 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 BNIP2Q12982 314 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 LAPTM4AQ15012 233 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 GLT6D1Q7Z4J2 308 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 SYVN1Q86TM6 617 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 ITIH5Q86UX2 942 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 SNX29P2Q8IUI4 249 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 ITFG1Q8TB96 612 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 MTFMTQ96DP5 389 aaKnown RBP15.13■□□□□ 0.01
UPF1-204ENST00000596842 HIPK3Q9H422 1215 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 LIMD1Q9UGP4 676 aa15.13■□□□□ 0.01
UPF1-204ENST00000596842 BBIP1A8MTZ0 92 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 A8MX80 341 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 USP41Q3LFD5 358 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 BLOC1S3Q6QNY0 202 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 TMEM125Q96AQ2 219 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 CLIP3Q96DZ5 547 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 ITCHQ96J02 903 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 COQ7Q99807 217 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 POLR1EQ9GZS1 481 aaKnown RBP15.12■□□□□ 0.01
UPF1-204ENST00000596842 SMOC2Q9H3U7 446 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 RGS17Q9UGC6 210 aaPredicted RBP15.12■□□□□ 0.01
UPF1-204ENST00000596842 SARDHQ9UL12 918 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 PADI3Q9ULW8 664 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 ARIH1Q9Y4X5 557 aaPredicted RBP15.12■□□□□ 0.01
UPF1-204ENST00000596842 PLXNA1Q9UIW2 1896 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 CDH3P22223 829 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 MYF6P23409 242 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 RFC2P35250 354 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 SELPLGQ14242 412 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 GRB14Q14449 540 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 NR1D2Q14995 579 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 SLC36A3Q495N2 470 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 PRMT9Q6P2P2 845 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 SPESP1Q6UW49 350 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 GET4Q7L5D6 327 aaPredicted RBP15.12■□□□□ 0.01
UPF1-204ENST00000596842 IRGQQ8WZA9 623 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 FBXO32Q969P5 355 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.12■□□□□ 0.01
UPF1-204ENST00000596842 BDH2Q9BUT1 245 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 WDR70Q9NW82 654 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 AASSQ9UDR5 926 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 A0A1W2PP18 115 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 BCL10O95999 233 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 MMP2P08253 660 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 SERPINF2P08697 491 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 MATN1P21941 496 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 EGFLAMQ63HQ2 1017 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 SMYD1Q8NB12 490 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 RSPH1Q8WYR4 309 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 CDKN2AIPNLQ96HQ2 116 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 GIMAP4Q9NUV9 329 aa15.12■□□□□ 0.01
UPF1-204ENST00000596842 POLR3HQ9Y535 204 aaPredicted RBP15.12■□□□□ 0.01
UPF1-204ENST00000596842 POLR2IP36954 125 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 HTR6P50406 440 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 PCBP1Q15365 356 aaKnown RBP eCLIP15.11■□□□□ 0.012e-10■■□□□ 11.5
UPF1-204ENST00000596842 ELMSAN1Q6PJG2 1045 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CCDC81Q6ZN84 652 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 KLHDC9Q8NEP7 349 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 EEF1AKMT1Q8WVE0 214 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 L3HYPDHQ96EM0 354 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 MYEOVQ96EZ4 313 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 LINGO1Q96FE5 620 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CSNK1G1Q9HCP0 422 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 SDR39U1Q9NRG7 319 aaPredicted RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 TRMT6Q9UJA5 497 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 GPC6Q9Y625 555 aaPredicted RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 OAS3Q9Y6K5 1087 aaKnown RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 MGEA5O60502 916 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 XYLBO75191 536 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CREB5Q02930 508 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 CYBRD1Q53TN4 286 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 GDF6Q6KF10 455 aaPredicted RBP15.11■□□□□ 0.01
UPF1-204ENST00000596842 MINDY1Q8N5J2 469 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 OR2T11Q8NH01 316 aa15.11■□□□□ 0.01
UPF1-204ENST00000596842 GIPC2Q8TF65 315 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms