RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 KLQ9UEF7 1012 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 CHMP2BQ9UQN3 213 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 MED16Q9Y2X0 877 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 ARID1BQ8NFD5 2236 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 RALGAPA1Q6GYQ0 2036 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 TP53BP1Q12888 1972 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 A6NCN8 305 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 EIF3HO15372 352 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIG1-210ENST00000596332 CD3EAPO15446 510 aaKnown RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 DFNA5O60443 496 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 RASGRP1O95267 797 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 ERVK-10P10266 1014 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 AK4P27144 223 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 SSTR1P30872 391 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CTBSQ01459 385 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CAV1Q03135 178 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CALCOCO2Q13137 446 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 ZRANB3Q5FWF4 1079 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 LDLRAP1Q5SW96 308 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 TEDDM1Q5T9Z0 273 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 NEPROQ6NW34 567 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 ZNF549Q6P9A3 640 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 OGFOD3Q6PK18 319 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 AFTPHQ6ULP2 937 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 PACS1Q6VY07 963 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 FAM83HQ6ZRV2 1179 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 CYS1Q717R9 158 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 MARK2Q7KZI7 788 aaKnown RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 C17orf82Q86X59 251 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 PHYKPLQ8IUZ5 450 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 LILRA3Q8N6C8 439 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 GPR161Q8N6U8 529 aaKnown RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 BEND7Q8N7W2 519 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 ZNF548Q8NEK5 533 aaPredicted RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 OR6P1Q8NGX9 317 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 SKA1Q96BD8 255 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CAMK1GQ96NX5 476 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 LRRC4CQ9HCJ2 640 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 TMEM9BQ9NQ34 198 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 FAM114A2Q9NRY5 505 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 TRNAU1APQ9NX07 287 aaKnown RBP10.43□□□□□ -0.74
LIG1-210ENST00000596332 SLC17A6Q9P2U8 582 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 NFU1Q9UMS0 254 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 PCDHGB2Q9Y5G2 931 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 MAD1L1Q9Y6D9 718 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CSNK1G3Q9Y6M4 447 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 SLC30A1Q9Y6M5 507 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 CABIN1Q9Y6J0 2220 aa10.43□□□□□ -0.74
LIG1-210ENST00000596332 PTPRZ1P23471 2315 aaPredicted RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 CXorf49A8MYA2 514 aaPredicted RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 AQP9O43315 295 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 GRID2O43424 1007 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 SH3BP5O60239 455 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 PIAS1O75925 651 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CDK14O94921 469 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 SLU7O95391 586 aaKnown RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 ASMTLO95671 621 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CER1O95813 267 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 TNFP01375 233 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 POLBP06746 335 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 ITGALP20701 1170 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 KELP23276 732 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 HTR1BP28222 390 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 MAGEA4P43358 317 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 GNPDA1P46926 289 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CLCNKAP51800 687 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 HNRNPKP61978 463 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIG1-210ENST00000596332 SLC14A1Q13336 389 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CTBP1Q13363 440 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 TCEA2Q15560 299 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 BCL7AQ4VC05 210 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 HSP90AA5PQ58FG0 334 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 DNAJC21Q5F1R6 531 aaKnown RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 PRRT3Q5FWE3 981 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 SPANXN3Q5MJ09 141 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CTSL3PQ5NE16 218 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 DNTTIP2Q5QJE6 756 aaKnown RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 CASC4Q6P4E1 433 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 TMEM220Q6QAJ8 160 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 TAS2R42Q7RTR8 314 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 RD3Q7Z3Z2 195 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CILP2Q8IUL8 1156 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CNTN4Q8IWV2 1026 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 ZBED8Q8IZ13 594 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 OXR1Q8N573 874 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIG1-210ENST00000596332 LKAAEAR1Q8TD35 194 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 IFT81Q8WYA0 676 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 LPGAT1Q92604 370 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 ULK4Q96C45 1275 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 FAM122AQ96E09 287 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 LINC00615Q96LM1 132 aaPredicted RBP10.42□□□□□ -0.74
LIG1-210ENST00000596332 C9orf72Q96LT7 481 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 COPS8Q99627 209 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 FUT8Q9BYC5 575 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 FOXP3Q9BZS1 431 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 EPB41L4BQ9H329 900 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 RMI1Q9H9A7 625 aa10.42□□□□□ -0.74
LIG1-210ENST00000596332 CARS2Q9HA77 564 aaKnown RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms