RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NRLP54845 237 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 KCTD19Q17RG1 926 aaPredicted RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 LAYNQ6UX15 382 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 C16orf89Q6UX73 402 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 PAGE2Q7Z2X7 111 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 SPATA6LQ8N4H0 392 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ZNF473Q8WTR7 871 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 ERP27Q96DN0 273 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 C12orf66Q96MD2 445 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 SCML1Q9UN30 329 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ULK1O75385 1050 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 PAK4O96013 591 aaPredicted RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 CYP17A1P05093 508 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 RFX3P48380 749 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 KRT72Q14CN4 511 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 COL13A1Q5TAT6 717 aaPredicted RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 Q6ZVL8 140 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 LPCAT2Q7L5N7 544 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ZNF483Q8TF39 744 aaPredicted RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 STARD8Q92502 1023 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 PIGKQ92643 395 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 VPS50Q96JG6 964 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 AIF1LQ9BQI0 150 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 THUMPD3Q9BV44 507 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 TEX12Q9BXU0 123 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 DDX28Q9NUL7 540 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 PADI4Q9UM07 663 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 CPSF4O95639 269 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 FYNP06241 537 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 CHI3L1P36222 383 aaPredicted RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 CXCL12P48061 93 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 TNK2Q07912 1038 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 PRKG2Q13237 762 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 SMAD4Q13485 552 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 NAE1Q13564 534 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 MRPL58Q14197 206 aaKnown RBP9.75□□□□□ -0.85
LIG3-216ENST00000593099 UAP1L1Q3KQV9 507 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 DNAL1Q4LDG9 190 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 GPRIN3Q6ZVF9 776 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ECSITQ9BQ95 431 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 IL1RL2Q9HB29 575 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 TCF7L2Q9NQB0 619 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 DNAJC11Q9NVH1 559 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 OBP2AQ9NY56 170 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 ENTPD4Q9Y227 616 aa9.75□□□□□ -0.85
LIG3-216ENST00000593099 A0A1W2PQU0 124 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 VAV1P15498 845 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 ZCCHC23Q6ZST2 131 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 NAT8LQ8N9F0 302 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 IMP4Q96G21 291 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 PCDH12Q9NPG4 1184 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 HEBP1Q9NRV9 189 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 NOP53Q9NZM5 478 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 GON4LQ3T8J9 2241 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 NPEPPSL1A6NEC2 478 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 K7ERQ8 282 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 MAFKO60675 156 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 S100A9P06702 114 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 CMPK1P30085 196 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GJA4P35212 333 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 CCNFP41002 786 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 HNF4AP41235 474 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 HTRA4P83105 476 aaPredicted RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 PLIN5Q00G26 463 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 FASTKD3Q14CZ7 662 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 QPCTQ16769 361 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 AP5B1Q2VPB7 878 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 DENND6AQ8IWF6 608 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 TAGAPQ8N103 731 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 SNRNP27Q8WVK2 155 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 CCDC124Q96CT7 223 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 FAM83CQ9BQN1 747 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 FAIM2Q9BWQ8 316 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 ARHGEF3Q9NR81 526 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GGT7Q9UJ14 662 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 SLC12A4Q9UP95 1085 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 INVSQ9Y283 1065 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GOLGA4Q13439 2230 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 RNGTTO60942 597 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 STK16O75716 305 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 RECQL5O94762 991 aaPredicted RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 OAS1P00973 400 aaKnown RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 C8GP07360 202 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 MYBL2P10244 700 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 SRCP12931 536 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 HPGDP15428 266 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 GRIA1P42261 906 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 IRAK1P51617 712 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 PTPN5P54829 565 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 NME5P56597 212 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 ESRRGP62508 458 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 BCL7CQ8WUZ0 217 aaPredicted RBP9.74□□□□□ -0.85
LIG3-216ENST00000593099 SPOCK2Q92563 424 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 ITFG2Q969R8 447 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 TPSD1Q9BZJ3 242 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 SRMSQ9H3Y6 488 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 KLC4Q9NSK0 619 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 HEY2Q9UBP5 337 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 ANGPTL2Q9UKU9 493 aa9.74□□□□□ -0.85
LIG3-216ENST00000593099 MAPRE3Q9UPY8 281 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms