RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ANOS1P23352 680 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CST5P28325 142 aaPredicted RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 IL15P40933 162 aaPredicted RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 FUT6P51993 359 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 EIF5P55010 431 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 HNRNPH2P55795 449 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 HDAC4P56524 1084 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 UBASH3AP57075 661 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 MYL5Q02045 173 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CEBPZQ03701 1054 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 GOLGA8FQ08AF8 430 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 STK38Q15208 465 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 DPCR1Q3MIW9 517 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 PAPPA-AS1Q5QFB9 102 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 INTS11Q5TA45 600 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 RESP18Q5W5W9 173 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 FAM180BQ6P0A1 224 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 TMCO3Q6UWJ1 677 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CYP26C1Q6V0L0 522 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 SATL1Q86VE3 508 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 SFR1Q86XK3 245 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 TMEM139Q8IV31 216 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 VSTM4Q8IW00 320 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 MLKLQ8NB16 471 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 ZMIZ2Q8NF64 920 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 SPATA22Q8NHS9 363 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 SNRNP27Q8WVK2 155 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 FIG4Q92562 907 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 HSPH1Q92598 858 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 TAF15Q92804 592 aaKnown RBP eCLIP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 TANKQ92844 425 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 ERGIC1Q969X5 290 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 C8orf76Q96K31 380 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 UBXN10Q96LJ8 280 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 MMTAG2Q9BU76 263 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 SIL1Q9H173 461 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 UNC45AQ9H3U1 944 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 PAG1Q9NWQ8 432 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CLIC5Q9NZA1 410 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 IFT80Q9P2H3 777 aaPredicted RBP4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 PDP2Q9P2J9 529 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 NDRG3Q9UGV2 375 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CD207Q9UJ71 328 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CRYL1Q9Y2S2 319 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF711Q9Y462 761 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 CAMTA1Q9Y6Y1 1673 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 LAMA4Q16363 1823 aa4.05□□□□□ -1.76
SMCHD1-208ENST00000583344 LTN1O94822 1766 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 VWA3AA6NCI4 1184 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF587BE7ETH6 402 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 EIF3FO00303 357 aaPredicted RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 RPS6KA5O75582 802 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 LDLRP01130 860 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 APOHP02749 345 aaPredicted RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 IFIT1P09914 478 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 PFKFB1P16118 471 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 ZNF18P17022 549 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 KRT9P35527 623 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 SYKP43405 635 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 TIMM10P62072 90 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 AIMP1Q12904 312 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 OASLQ15646 514 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 ALX1Q15699 326 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 EFNB3Q15768 340 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 SLC18A3Q16572 532 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 IMMTQ16891 758 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 CES5AQ6NT32 575 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 JMJD6Q6NYC1 403 aaPredicted RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 MZT2BQ6NZ67 158 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 CFAP161Q6P656 301 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 OLFM4Q6UX06 510 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 SLC9B2Q86UD5 537 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 TRIML1Q8N9V2 468 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 NCOA7Q8NI08 942 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 GDPD5Q8WTR4 605 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 TMEM170AQ8WVE7 144 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 HDAC2Q92769 488 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 EXOC4Q96A65 974 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 TMEM19Q96HH6 336 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 UTP14AQ9BVJ6 771 aaKnown RBP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 CARD6Q9BX69 1037 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 C1QTNF5Q9BXJ0 243 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 FUT8Q9BYC5 575 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 FTOQ9C0B1 505 aaKnown RBP eCLIP4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 ITM2CQ9NQX7 267 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 GJD2Q9UKL4 321 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 CDC14AQ9UNH5 594 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 VDAC3Q9Y277 283 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 PPP2R2CQ9Y2T4 447 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 PSAT1Q9Y617 370 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 PHLPP1O60346 1717 aa4.04□□□□□ -1.76
SMCHD1-208ENST00000583344 ROBO1Q9Y6N7 1651 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 ITIH6Q6UXX5 1313 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 STX16-NPEPL1H3BU86 382 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 EBAG9O00559 213 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 STX16O14662 325 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 MID1O15344 667 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 FGF17O60258 216 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 SMC2O95347 1197 aa4.03□□□□□ -1.76
SMCHD1-208ENST00000583344 ATP1A1P05023 1023 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms