RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FAM8A1Q9UBU6 413 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 TBC1D29Q9UFV1 150 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 TTC7AQ9ULT0 858 aaPredicted RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 CACNA1BQ00975 2339 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 AGRPO00253 132 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 GAPDHSO14556 408 aaPredicted RBP19.22■□□□□ 0.67
SS18-209ENST00000578595 RALBP11234 206 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 ZNF7P17097 686 aaPredicted RBP19.22■□□□□ 0.67
SS18-209ENST00000578595 CYP4F3Q08477 520 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 NFATC2Q13469 925 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 CDCP2Q5VXM1 449 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 C4orf22Q6V702 233 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 TAS2R42Q7RTR8 314 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 SPRED1Q7Z699 444 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 RASGEF1CQ8N431 466 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 SLC37A2Q8TED4 501 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 COG1Q8WTW3 980 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 ULK4Q96C45 1275 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 EPB41L5Q9HCM4 733 aa19.22■□□□□ 0.67
SS18-209ENST00000578595 ATXN7L1Q9ULK2 861 aaPredicted RBP19.22■□□□□ 0.67
SS18-209ENST00000578595 ANKRD11Q6UB99 2663 aaPredicted RBP19.22■□□□□ 0.67
SS18-209ENST00000578595 CHUKO15111 745 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 TCEA3O75764 348 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 EML2O95834 649 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 GRIA1P42261 906 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 ISXQ2M1V0 245 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 C3orf38Q5JPI3 329 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 FNBP1LQ5T0N5 605 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 ZNF761Q86XN6 746 aaPredicted RBP19.21■□□□□ 0.67
SS18-209ENST00000578595 TRIM48Q8IWZ4 208 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 RASGEF1AQ8N9B8 481 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 DTX3LQ8TDB6 740 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 STYXQ8WUJ0 223 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 SLC38A3Q99624 504 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 TIMM29Q9BSF4 260 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 PRDM8Q9NQV8 689 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 SMOXQ9NWM0 555 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 SNX12Q9UMY4 172 aa19.21■□□□□ 0.67
SS18-209ENST00000578595 HEATR9A2RTY3 570 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 D6RAR5 112 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 CFAP99D6REC4 459 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 ZNF185O15231 689 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 F3P13726 295 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 PNLIPP16233 465 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 CA5AP35218 305 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 MAPK9P45984 424 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 SESN2P58004 480 aaPredicted RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 OR1D5P58170 312 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 HHEXQ03014 270 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 GPS1Q13098 491 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 MSLNQ13421 630 aaPredicted RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 CAMK2BQ13554 666 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 SKIDA1Q1XH10 827 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 CCDC137Q6PK04 289 aaKnown RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 TMEM220Q6QAJ8 160 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 SNX20Q7Z614 316 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 PPHLN1Q8NEY8 458 aaKnown RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 NAT14Q8WUY8 206 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 ATXN7L3BQ96GX2 97 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 AHCYL2Q96HN2 611 aaKnown RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 CAPZA3Q96KX2 299 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 FOXP3Q9BZS1 431 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 NLE1Q9NVX2 485 aaPredicted RBP19.2■□□□□ 0.66
SS18-209ENST00000578595 KCNK4Q9NYG8 393 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 SLC23A2Q9UGH3 650 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 ZMIZ1Q9ULJ6 1067 aa19.2■□□□□ 0.66
SS18-209ENST00000578595 A0A1W2PQM1 296 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 SUN1O94901 812 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 KRT14P02533 472 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 MPOP05164 745 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 TCP1P17987 556 aaKnown RBP19.19■□□□□ 0.66
SS18-209ENST00000578595 IDSP22304 550 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 RPL10P27635 214 aaKnown RBP19.19■□□□□ 0.66
SS18-209ENST00000578595 CTSCP53634 463 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 DRG2P55039 364 aaKnown RBP19.19■□□□□ 0.66
SS18-209ENST00000578595 GABREP78334 506 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 XIAPP98170 497 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 LAMB3Q13751 1172 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 TTC27Q6P3X3 843 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 MICALCLQ6ZW33 695 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 SLC9B2Q86UD5 537 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 AMZ2Q86W34 360 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 ZNF547Q8IVP9 402 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 CACTIN-AS1Q8N1I8 211 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 NXPE1Q8N323 547 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 SFRP1Q8N474 314 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.19■□□□□ 0.66
SS18-209ENST00000578595 COPS8Q99627 209 aa19.19■□□□□ 0.66
SS18-209ENST00000578595 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.19■□□□□ 0.66
SS18-209ENST00000578595 URB1O60287 2271 aaKnown RBP19.18■□□□□ 0.66
SS18-209ENST00000578595 PPM1DO15297 605 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 PHF2O75151 1096 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 POP7O75817 140 aaKnown RBP19.18■□□□□ 0.66
SS18-209ENST00000578595 COILP38432 576 aaPredicted RBP19.18■□□□□ 0.66
SS18-209ENST00000578595 HALP42357 657 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 INHBCP55103 352 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 PHF19Q5T6S3 580 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 IYDQ6PHW0 289 aa19.18■□□□□ 0.66
SS18-209ENST00000578595 BEND7Q8N7W2 519 aaPredicted RBP19.18■□□□□ 0.66
SS18-209ENST00000578595 SGF29Q96ES7 293 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms