RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CYP1B1Q16678 543 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 SLC39A12Q504Y0 691 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 HSP90AB3PQ58FF7 597 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ARL13AQ5H913 290 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 KRT79Q5XKE5 535 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 TMEM270Q6UE05 265 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 IL20RBQ6UXL0 311 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GBP6Q6ZN66 633 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 MSANTD1Q6ZTZ1 278 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 SPATA19Q7Z5L4 167 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 MAPKAPK5Q8IW41 473 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 DHX40Q8IX18 779 aaKnown RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 Q8N3U1 123 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PNPLA1Q8N8W4 532 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ATAD1Q8NBU5 361 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ZBTB44Q8NCP5 570 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PTPMT1Q8WUK0 201 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 GLT1D1Q96MS3 346 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 GPR78Q96P69 363 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 BBS4Q96RK4 519 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 MLPHQ9BV36 600 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 CINPQ9BW66 212 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 TEX101Q9BY14 249 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 KRT23Q9C075 422 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 XYLT2Q9H1B5 865 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 MRPL44Q9H9J2 332 aaKnown RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 KCNK12Q9HB15 430 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 CD209Q9NNX6 404 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ENTPD7Q9NQZ7 604 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 ARL15Q9NXU5 204 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PSD3Q9NYI0 1048 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 NLKQ9UBE8 527 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 CRNNQ9UBG3 495 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 HECAQ9UBI9 543 aaPredicted RBP5.82□□□□□ -1.48
VPS53-219ENST00000576019 GMEB2Q9UKD1 530 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 CMAHPQ9Y471 501 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PCDHGA5Q9Y5G8 931 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 PCDHGA1Q9Y5H4 931 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 AP1M2Q9Y6Q5 423 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 SCN5AQ14524 2016 aa5.82□□□□□ -1.48
VPS53-219ENST00000576019 SHROOM3Q8TF72 1996 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 A0A1W2PR77 199 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 SMIM30A4D0T7 59 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 OR6C68A6NDL8 312 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 AP4M1O00189 453 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CES2O00748 559 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 LINC01565O15544 149 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 HCRTR2O43614 444 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 MFAP3LO75121 409 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 RHOP08100 348 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 IRF1P10914 325 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CYP2A6P11509 494 aaPredicted RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 MYL6BP14649 208 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 PDGFRAP16234 1089 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 ZFXP17010 805 aaPredicted RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 CASTP20810 708 aaKnown RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 STAT6P42226 847 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 SKIV2L2P42285 1042 aaKnown RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 MATR3P43243 847 aaKnown RBP eCLIP5.81□□□□□ -1.489e-10■■□□□ 13.9
VPS53-219ENST00000576019 BLKP51451 505 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 GPC3P51654 580 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 E2F1Q01094 437 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 GAB1Q13480 694 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 OLIG2Q13516 323 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 PROSER3Q2NL68 480 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 PRAMEF19Q5SWL8 479 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 PMS2CLQ68D20 193 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 PRSS45Q7RTY3 260 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 RABEPKQ7Z6M1 372 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 NEK8Q86SG6 692 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 WDR63Q8IWG1 891 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 KBTBD2Q8IY47 623 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CCDC13Q8IYE1 715 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 TBC1D21Q8IYX1 336 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 SAMD14Q8IZD0 417 aaPredicted RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 AMER2Q8N7J2 671 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 KLHDC9Q8NEP7 349 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 SUSD6Q92537 303 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 LPGAT1Q92604 370 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 RSPRY1Q96DX4 576 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CDRT15Q96T59 188 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CACNG6Q9BXT2 260 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CADM1Q9BY67 442 aaKnown RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 TMEM248Q9NWD8 314 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 HAO2Q9NYQ3 351 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 GDE1Q9NZC3 331 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CNIH4Q9P003 139 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 SEPT10Q9P0V9 454 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 ACTR3BQ9P1U1 418 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 MGAT4CQ9UBM8 478 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 KCNE5Q9UJ90 142 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 AAR2Q9Y312 384 aaKnown RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 REXO2Q9Y3B8 237 aaKnown RBP5.81□□□□□ -1.48
VPS53-219ENST00000576019 SH3BP1Q9Y3L3 701 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 MYO10Q9HD67 2058 aa5.81□□□□□ -1.48
VPS53-219ENST00000576019 CACNA1IQ9P0X4 2223 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 EDDM13A0A1B0GTR0 161 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 A0A1B0GVM2 712 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 NPIPB11E5RHQ5 1161 aa5.8□□□□□ -1.48
VPS53-219ENST00000576019 SLC16A3O15427 465 aaKnown RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms