RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ENDOD1O94919 500 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 KRT6AP02538 564 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 KRT6BP04259 564 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 LINC00032P0C843 101 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 HSMCR30P0CW71 290 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 SMIM10L2AP0DMW4 78 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 SMIM10L2BP0DMW5 78 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 AGXTP21549 392 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 MAGEA3P43357 314 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 MAP2K4P45985 399 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 AFF1P51825 1210 aaKnown RBP9.51□□□□□ -0.89
CCDC40-212ENST00000574799 TAS2R39P59534 338 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 FCHO2Q0JRZ9 810 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 LRIT3Q3SXY7 679 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 SDE2Q6IQ49 451 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 ZNF280DQ6N043 979 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 C17orf99Q6UX52 265 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 NEK10Q6ZWH5 1172 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 OR13J1Q8NGT2 312 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 ATXN3LQ9H3M9 355 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 DSN1Q9H410 356 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 DPEP3Q9H4B8 488 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 NXF3Q9H4D5 531 aaKnown RBP9.51□□□□□ -0.89
CCDC40-212ENST00000574799 COMMD8Q9NX08 183 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 EHD3Q9NZN3 535 aa9.51□□□□□ -0.89
CCDC40-212ENST00000574799 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.51□□□□□ -0.89
CCDC40-212ENST00000574799 MEIS3P2A8K0S8 358 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 BBIP1A8MTZ0 92 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 EFCAB9A8MZ26 197 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 NPHS1O60500 1241 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 IPO13O94829 963 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 IL18RAPO95256 599 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PTPN2P17706 415 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 TGM1P22735 817 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CASP3P42574 277 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 IL12RB1P42701 662 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 MAGEA6P43360 314 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 NUMBP49757 651 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ARHGDIAP52565 204 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ITKQ08881 620 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CEP78Q5JTW2 689 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 NAPEPLDQ6IQ20 393 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 LRRC8DQ7L1W4 858 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 GOLM1Q8NBJ4 401 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 GTF3C2Q8WUA4 911 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PPM1MQ96MI6 270 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 KCTD15Q96SI1 283 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 TBCDQ9BTW9 1192 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 EXOSC4Q9NPD3 245 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 FNDC1Q4ZHG4 1894 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 EYSQ5T1H1 3165 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 H0YAE9 185 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 KMOO15229 486 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 TREHO43280 583 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CELF2O95319 508 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ZNF37AP17032 561 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CRHBPP24387 322 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ALDH3A2P51648 485 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 TPI1P60174 286 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 IFITM3Q01628 133 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 LAPTM5Q13571 262 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 FAM214AQ32MH5 1076 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 SPATC1Q76KD6 591 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PLEKHH3Q7Z736 793 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 P3H2Q8IVL5 708 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CCDC185Q8N715 623 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PPHLN1Q8NEY8 458 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ROGDIQ9GZN7 287 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 DCSTAMPQ9H295 470 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ABHD16BQ9H3Z7 469 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 KIF17Q9P2E2 1029 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PCDHGA8Q9Y5G5 932 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 MAGEB16A2A368 324 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 UGT2B11O75310 529 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 PMPCBO75439 489 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CYP7B1O75881 506 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 RECQL5O94762 991 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CPNE6O95741 557 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CHRNA1P02708 482 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 RBP1P09455 135 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 C7P10643 843 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 LBPP18428 481 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 BDNFP23560 247 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 RPL34P49207 117 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 HIST2H2ACQ16777 129 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ATP6AP1LQ52LC2 224 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 KIAA0319Q5VV43 1072 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 RAP1GAP2Q684P5 730 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 DENND5AQ6IQ26 1287 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ZC3HC1Q86WB0 502 aaKnown RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CCDC28AQ8IWP9 274 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ABI1Q8IZP0 508 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 LSMEM2Q8N112 164 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 EID3Q8N140 333 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 CADM2Q8N3J6 435 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 OR6Q1Q8NGQ2 317 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 RNF139Q8WU17 664 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 BIRC7Q96CA5 298 aa9.5□□□□□ -0.89
CCDC40-212ENST00000574799 UHRF1Q96T88 793 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-212ENST00000574799 ASB7Q9H672 318 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms