RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 AP1B1Q10567 949 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 SLC14A2Q15849 920 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 ATP1A1-AS1Q5TC04 95 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 VSIG1Q86XK7 387 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 ZNF547Q8IVP9 402 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 TRIM48Q8IWZ4 208 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 TGM7Q96PF1 710 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 CEP41Q9BYV8 373 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 GPR63Q9BZJ6 419 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 SLC25A51Q9H1U9 297 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 POT1Q9NUX5 634 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 KCTD3Q9Y597 815 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 C3orf70A6NLC5 250 aaPredicted RBP20.73■□□□□ 0.91
VPS53-216ENST00000574029 BRAFP15056 766 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 BPIP17213 487 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 CASP14P31944 242 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 LEPRP48357 1165 aaKnown RBP20.73■□□□□ 0.91
VPS53-216ENST00000574029 SH3BP2P78314 561 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 CDK18Q07002 472 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 SEPT6Q14141 434 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 IL11RAQ14626 422 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 SLC18A3Q16572 532 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 AGAP9Q5VTM2 703 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 C6orf15Q6UXA7 325 aaPredicted RBP20.73■□□□□ 0.91
VPS53-216ENST00000574029 WASH2PQ6VEQ5 465 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 AGAP3Q96P47 875 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 OLFM3Q96PB7 478 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 OR6C1Q96RD1 312 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 WASH6PQ9NQA3 447 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 DNAJC16Q9Y2G8 782 aa20.73■□□□□ 0.91
VPS53-216ENST00000574029 LRRD1A4D1F6 860 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 GOLGA6L3A6NEY3 463 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 PDZK1P1A8MUH7 402 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 MTX2O75431 263 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 SLC4A1P02730 911 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 DLSTP36957 453 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 SEPHS1P49903 392 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 UBAP2LQ14157 1087 aaKnown RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 PDK1Q15118 436 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 SEPT7Q16181 437 aaKnown RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 IGFBP7Q16270 282 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 PCSK7Q16549 785 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 KHDC1Q4VXA5 237 aaKnown RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 LACTB2Q53H82 288 aaPredicted RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 PRSS42Q7Z5A4 293 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 VPS35Q96QK1 796 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 SRPK1Q96SB4 655 aaKnown RBP20.72■□□□□ 0.91
VPS53-216ENST00000574029 SLC40A1Q9NP59 571 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 CROTQ9UKG9 612 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 TMPRSS11EQ9UL52 423 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 KCNMB2Q9Y691 235 aa20.72■□□□□ 0.91
VPS53-216ENST00000574029 APOL1O14791 398 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 CDK14O94921 469 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 TMEM253P0C7T8 217 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 FGF5P12034 268 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 IDSP22304 550 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 RPL10P27635 214 aaKnown RBP20.71■□□□□ 0.91
VPS53-216ENST00000574029 CAPZBP47756 277 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 MESDQ14696 234 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 ASTE1Q2TB18 679 aaPredicted RBP20.71■□□□□ 0.91
VPS53-216ENST00000574029 C11orf96Q7Z7L8 435 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 RBM12BQ8IXT5 1001 aaKnown RBP20.71■□□□□ 0.91
VPS53-216ENST00000574029 GALNT6Q8NCL4 622 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 KLHL6Q8WZ60 621 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 RSC1A1Q92681 617 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 XPO4Q9C0E2 1151 aaKnown RBP20.71■□□□□ 0.91
VPS53-216ENST00000574029 RAB33BQ9H082 229 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 ANKMY1Q9P2S6 941 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 EPHA6Q9UF33 1036 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 PCDHB3Q9Y5E6 796 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 SPO11Q9Y5K1 396 aa20.71■□□□□ 0.91
VPS53-216ENST00000574029 CLEC18AA5D8T8 446 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 OR52A4PA6NMU1 304 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 AURKAO14965 403 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 PPP1R12AO14974 1030 aaPredicted RBP20.7■□□□□ 0.9
VPS53-216ENST00000574029 KIF1CO43896 1103 aaKnown RBP20.7■□□□□ 0.9
VPS53-216ENST00000574029 RASSF9O75901 435 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 KIAA0754O94854 1291 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 NDUFA10O95299 355 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 NDST3O95803 873 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 MT-CYBP00156 380 aaPredicted RBP20.7■□□□□ 0.9
VPS53-216ENST00000574029 GPR18Q14330 331 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 CLEC18BQ6UXF7 455 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 NPNTQ6UXI9 565 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 RASGRP3Q8IV61 690 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 CLEC18CQ8NCF0 446 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 SPATA22Q8NHS9 363 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 RNF31Q96EP0 1072 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 STAMBPL1Q96FJ0 436 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 MAK16Q9BXY0 300 aaKnown RBP20.7■□□□□ 0.9
VPS53-216ENST00000574029 GLOD4Q9HC38 313 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 IFNKQ9P0W0 207 aa20.7■□□□□ 0.9
VPS53-216ENST00000574029 PTPN13Q12923 2485 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 FURINP09958 794 aa20.69■□□□□ 0.9
VPS53-216ENST00000574029 ZFXP17010 805 aaPredicted RBP20.69■□□□□ 0.9
VPS53-216ENST00000574029 DRG2P55039 364 aaKnown RBP20.69■□□□□ 0.9
VPS53-216ENST00000574029 TMEM115Q12893 351 aaPredicted RBP20.69■□□□□ 0.9
VPS53-216ENST00000574029 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.69■□□□□ 0.9
VPS53-216ENST00000574029 ATP13A5Q4VNC0 1218 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms