RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TMEM199Q8N511 208 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 OR56A4Q8NGH8 313 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 LINGO1Q96FE5 620 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 PLEKHG4BQ96PX9 1271 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 ALG2Q9H553 416 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 BPIFA1Q9NP55 256 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 TCRBV5S2A0A599 114 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CLGNO14967 610 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 BAIAP3O94812 1187 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CHEK2O96017 543 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 MTHFD1P11586 935 aaKnown RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 PCSK6P29122 969 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 ERVK-8P63133 956 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 PDCD4Q53EL6 469 aaKnown RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 KIAA2013Q8IYS2 634 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 FAM47BQ8NA70 645 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 HM13Q8TCT9 377 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 TMIGD2Q96BF3 282 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 CENPNQ96H22 339 aaPredicted RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 ELAC1Q9H777 363 aaKnown RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 SLAMF8Q9P0V8 285 aa22.56■■□□□ 1.2
VPS53-211ENST00000571805 EIF2B4Q9UI10 523 aaKnown RBP22.56■■□□□ 1.2
VPS53-211ENST00000571805 CASP8AP2Q9UKL3 1982 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 CBX4O00257 560 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 TPST1O60507 370 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 SNX2O60749 519 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 GPIP06744 558 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 IL12AP29459 219 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 POLR2JP52435 117 aaKnown RBP22.55■■□□□ 1.2
VPS53-211ENST00000571805 TUBA4AP68366 448 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 LIPEQ05469 1076 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 ATP6AP1Q15904 470 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 PRSS55Q6UWB4 352 aaPredicted RBP22.55■■□□□ 1.2
VPS53-211ENST00000571805 GPRIN3Q6ZVF9 776 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 TMEM173Q86WV6 379 aaPredicted RBP22.55■■□□□ 1.2
VPS53-211ENST00000571805 TTC30BQ8N4P2 665 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 GLT1D1Q96MS3 346 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 C1orf50Q9BV19 199 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 MUC13Q9H3R2 512 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 OCEL1Q9H607 264 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 CLK4Q9HAZ1 481 aaKnown RBP22.55■■□□□ 1.2
VPS53-211ENST00000571805 NMRK2Q9NPI5 230 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 SLC8A2Q9UPR5 921 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 A0A0U1RQS6 177 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 H7C4K7 107 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 ACOX3O15254 700 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 OR4F21O95013 312 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 CD160O95971 181 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 GNAO1P09471 354 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 C6orf136Q5SQH8 315 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 SPRED1Q7Z699 444 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 CPNE9Q8IYJ1 553 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 KCNJ9Q92806 393 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 NACA2Q9H009 215 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 CD274Q9NZQ7 290 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 LEF1Q9UJU2 399 aaPredicted RBP22.55■■□□□ 1.2
VPS53-211ENST00000571805 TMCO1Q9UM00 188 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 PCDHB7Q9Y5E2 793 aa22.55■■□□□ 1.2
VPS53-211ENST00000571805 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 ZNF840PA6NDX5 716 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 CCDC154A6NI56 674 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ADAM12O43184 909 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 COCHO43405 550 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 TRAF2Q12933 501 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ZNF177Q13360 481 aaPredicted RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 TMEM259Q4ZIN3 620 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ZRANB3Q5FWF4 1079 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 Q6ZSR9 355 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 IFNEQ86WN2 208 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 EFHBQ8N7U6 833 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ZNF382Q96SR6 550 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ADGRE3Q9BY15 652 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ZIM2Q9NZV7 527 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 THEGQ9P2T0 379 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ST14Q9Y5Y6 855 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 TYW5A2RUC4 315 aaKnown RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 H7C0S8 307 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 INPP4BO15327 924 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 MYF6P23409 242 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ARF5P84085 180 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 CYP51A1Q16850 503 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 ANKS3Q6ZW76 656 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 PAPD5Q8NDF8 572 aaKnown RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 OR52B6Q8NGF0 335 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 PROKR1Q8TCW9 393 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 RPL10LQ96L21 214 aaKnown RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 TMEM74Q96NL1 305 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 KCTD14Q9BQ13 255 aaPredicted RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 C9orf16Q9BUW7 83 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 GKN1Q9NS71 199 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 DDX18Q9NVP1 670 aaKnown RBP22.54■■□□□ 1.2
VPS53-211ENST00000571805 RNF186Q9NXI6 227 aa22.54■■□□□ 1.2
VPS53-211ENST00000571805 PFDN6O15212 129 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 STX7O15400 261 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 STC2O76061 302 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 C1RP00736 705 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 NCK1P16333 377 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 ADARP55265 1226 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 EEFSECP57772 596 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 ERVPABLB-1P60509 514 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms