RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ITGA7Q13683 1181 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 TRIM29Q14134 588 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 KEAP1Q14145 624 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 ME3Q16798 604 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 LRRC26Q2I0M4 334 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 ATG9BQ674R7 924 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 BBS12Q6ZW61 710 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 ANKRD33Q7Z3H0 272 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 PALB2Q86YC2 1186 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 CLIP4Q8N3C7 705 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 TMEM170AQ8WVE7 144 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 MED30Q96HR3 178 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 COG8Q96MW5 612 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 SPATA33Q96N06 139 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 CTAGE1Q96RT6 745 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 CLSTN3Q9BQT9 956 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 MTG1Q9BT17 334 aaPredicted RBP4.16□□□□□ -1.74
NUP88-202ENST00000570937 SLC26A6Q9BXS9 759 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 STN1Q9H668 368 aaKnown RBP4.16□□□□□ -1.74
NUP88-202ENST00000570937 MVB12BQ9H7P6 319 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 WDR6Q9NNW5 1121 aaKnown RBP4.16□□□□□ -1.74
NUP88-202ENST00000570937 GPR52Q9Y2T5 361 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 ASTN1O14525 1302 aa4.16□□□□□ -1.74
NUP88-202ENST00000570937 KIAA0100Q14667 2235 aaKnown RBP4.15□□□□□ -1.74
NUP88-202ENST00000570937 ZNFX1Q9P2E3 1918 aaKnown RBP4.15□□□□□ -1.74
NUP88-202ENST00000570937 IGHV4-28A0A0C4DH34 117 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ESYT2A0FGR8 921 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 TSPAN3O60637 253 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 PFKFB2O60825 505 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 CLTBP09497 229 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ICAM3P32942 547 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ARSFP54793 590 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 BEX3Q00994 111 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 SETQ01105 290 aaPredicted RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 TLE2Q04725 743 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 FAM27E3Q08E93 113 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ASIC2Q16515 512 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 FBXO43Q4G163 708 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 CEP55Q53EZ4 464 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 CELF3Q5SZQ8 465 aaKnown RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 METTL7BQ6UX53 244 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 CXCL17Q6UXB2 119 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 GHDCQ8N2G8 530 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 PPTC7Q8NI37 304 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 FAM216AQ8WUB2 273 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 NUDCD2Q8WVJ2 157 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 RAB40AQ8WXH6 277 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 HSPH1Q92598 858 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ATOH1Q92858 354 aaPredicted RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 ZSCAN31Q96LW9 406 aaPredicted RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 INPP4AQ96PE3 977 aaPredicted RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 NAP1L4Q99733 375 aaKnown RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 REEP2Q9BRK0 252 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 SDF4Q9BRK5 362 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 MSTO1Q9BUK6 570 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 NPFFR1Q9GZQ6 430 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 LHPPQ9H008 270 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ZMYND12Q9H0C1 365 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 LMAN2LQ9H0V9 348 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 SLCO5A1Q9H2Y9 848 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ENTPD7Q9NQZ7 604 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 ZNF215Q9UL58 517 aaPredicted RBP4.15□□□□□ -1.75
NUP88-202ENST00000570937 KIF3AQ9Y496 699 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 FRMPD4Q14CM0 1322 aa4.15□□□□□ -1.75
NUP88-202ENST00000570937 NID2Q14112 1375 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 PLXNA1Q9UIW2 1896 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 SH2D7A6NKC9 451 aaPredicted RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 ACOT8O14734 319 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 CTAGE5O15320 804 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 KLK10O43240 276 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 GGPS1O95749 300 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 TIMP1P01033 207 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 PRSS2P07478 247 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 WEE2P0C1S8 567 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 FGF3P11487 239 aaPredicted RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 CKMT1AP12532 417 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 CTPS1P17812 591 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 TTKP33981 857 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 ARHGAP1Q07960 439 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 ST3GAL1Q11201 340 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 DCAF6Q58WW2 860 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 NIPA1Q7RTP0 329 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 NEXN-AS1Q8NBZ9 246 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 OR14A16Q8NHC5 309 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 UBE2Q2Q8WVN8 375 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 SEPT1Q8WYJ6 367 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 MXRA8Q9BRK3 442 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 LLPHQ9BRT6 129 aaKnown RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 MTIF3Q9H2K0 278 aaKnown RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 SMARCAD1Q9H4L7 1026 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 AZI2Q9H6S1 392 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 TBC1D22BQ9NU19 505 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 ORC3Q9UBD5 711 aaPredicted RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 DDX49Q9Y6V7 483 aaKnown RBP4.14□□□□□ -1.75
NUP88-202ENST00000570937 STK36Q9NRP7 1315 aa4.14□□□□□ -1.75
NUP88-202ENST00000570937 C17orf113A0A1B0GUU1 675 aa4.13□□□□□ -1.75
NUP88-202ENST00000570937 EBAG9O00559 213 aa4.13□□□□□ -1.75
NUP88-202ENST00000570937 PEX12O00623 359 aa4.13□□□□□ -1.75
NUP88-202ENST00000570937 HSD3B1P14060 373 aa4.13□□□□□ -1.75
NUP88-202ENST00000570937 CD72P21854 359 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms