RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FKBPLQ9UIM3 349 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 SATB2Q9UPW6 733 aa14.83□□□□□ -0.04
VPS39-210ENST00000568357 KMOO15229 486 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 PRAMEF1O95521 474 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 CRTAMO95727 393 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 IFNB1P01574 187 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 FGGP02679 453 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 ZNF7P17097 686 aaPredicted RBP14.82□□□□□ -0.04
VPS39-210ENST00000568357 CD1CP29017 333 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 CLCNKAP51800 687 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 ZNF140P52738 457 aaPredicted RBP14.82□□□□□ -0.04
VPS39-210ENST00000568357 GABREP78334 506 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 TMPRSS15P98073 1019 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 XIAPP98170 497 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 ZFP36L1Q07352 338 aaKnown RBP14.82□□□□□ -0.04
VPS39-210ENST00000568357 CCNG2Q16589 344 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 PLA2G4EQ3MJ16 856 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 AMZ1Q400G9 498 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 GPRC6AQ5T6X5 926 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 MICALCLQ6ZW33 695 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 USP53Q70EK8 1073 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 C11orf96Q7Z7L8 435 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 LRRTM4Q86VH4 590 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 RASGEF1AQ8N9B8 481 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 OR13C4Q8NGS5 318 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 PRR11Q96HE9 360 aaPredicted RBP14.82□□□□□ -0.04
VPS39-210ENST00000568357 RDH14Q9HBH5 336 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 FEZ2Q9UHY8 353 aaPredicted RBP14.82□□□□□ -0.04
VPS39-210ENST00000568357 RP1P56715 2156 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 ZNF462Q96JM2 2506 aa14.82□□□□□ -0.04
VPS39-210ENST00000568357 COL27A1Q8IZC6 1860 aaPredicted RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 PRR19A6NJB7 356 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 CCL22O00626 93 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 PSMD3O43242 534 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 CEP104O60308 925 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 SRP72O76094 671 aaKnown RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 ZSCAN5DPP0CG00 497 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 F3P13726 295 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 ITPKBP27987 946 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 GPR3P46089 330 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 FASLGP48023 281 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 CTSCP53634 463 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 BIRC2Q13490 618 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 ITGA9Q13797 1035 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 C3orf38Q5JPI3 329 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 LDLRAP1Q5SW96 308 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 NKAIN2Q5VXU1 208 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 ZNF574Q6ZN55 896 aaPredicted RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 ZNF761Q86XN6 746 aaPredicted RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 DDHD1Q8NEL9 900 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 LRRC45Q96CN5 670 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 ASB8Q9H765 288 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 SMOXQ9NWM0 555 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 SCHIP1Q9P0W5 487 aaPredicted RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 DRG1Q9Y295 367 aaKnown RBP14.81□□□□□ -0.04
VPS39-210ENST00000568357 DNAJC16Q9Y2G8 782 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 MYLKQ15746 1914 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 CFAP46Q8IYW2 2715 aa14.81□□□□□ -0.04
VPS39-210ENST00000568357 IGHV1OR21-1A0A087WYE8 117 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 AGAP14A8MT82 685 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 DXOO77932 396 aaKnown RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 CPNE6O95741 557 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 CCKBRP32239 447 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 RPL22P35268 128 aaKnown RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 GRIA1P42261 906 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 INHBCP55103 352 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 PDE1BQ01064 536 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 CFHR1Q03591 330 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 NFATC2Q13469 925 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 POU6F1Q14863 301 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 KCTD19Q17RG1 926 aaPredicted RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 LONRF2Q1L5Z9 754 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 INSCQ1MX18 579 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 TBC1D25Q3MII6 688 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 DRICH1Q6PGQ1 229 aaPredicted RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 FOXR1Q6PIV2 292 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 TMEM220Q6QAJ8 160 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 TRAPPC5Q8IUR0 188 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 SLITRK4Q8IW52 837 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 LSMEM2Q8N112 164 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 OR52K1Q8NGK4 314 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 WDR36Q8NI36 951 aaKnown RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 NAT14Q8WUY8 206 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 FGF11Q92914 225 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 DNAJC1Q96KC8 554 aaKnown RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 TTC25Q96NG3 672 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 SLC46A1Q96NT5 459 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 TIMM29Q9BSF4 260 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 SEMA6CQ9H3T2 930 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 OSGEPL1Q9H4B0 414 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 FAM96AQ9H5X1 160 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 EPB41L5Q9HCM4 733 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 SARS2Q9NP81 518 aaKnown RBP14.8□□□□□ -0.04
VPS39-210ENST00000568357 ASCL3Q9NQ33 180 aa14.8□□□□□ -0.04
VPS39-210ENST00000568357 CCDC187A0A096LP49 1063 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 OR2AG2A6NM03 316 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 TMX2-CTNND1H3BSU7 103 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 AGRPO00253 132 aa14.79□□□□□ -0.04
VPS39-210ENST00000568357 POP7O75817 140 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms