RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 WDR13Q9H1Z4 485 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 TRPC7Q9HCX4 862 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 GJD2Q9UKL4 321 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 ACAD8Q9UKU7 415 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 PADI3Q9ULW8 664 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 YIPF1Q9Y548 306 aa2.68□□□□□ -1.98
VPS35-207ENST00000568191 A6NL46 340 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 SLCO1B7G3V0H7 640 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 ZBTB43O43298 467 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 TNFSF14O43557 240 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 ZNF500O60304 480 aaPredicted RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 NDUFS3O75489 264 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 BMP10O95393 424 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 IGHV4-38-2P0DP08 117 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 NR1D1P20393 614 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 MSH3P20585 1137 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 ZNF10P21506 573 aaPredicted RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 MRPS34P82930 218 aaKnown RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 CDC16Q13042 620 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 FRG1Q14331 258 aaKnown RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 ALG11Q2TAA5 492 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 KIAA1644Q3SXP7 199 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 ZNF805Q5CZA5 627 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 TCTE1Q5JU00 501 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 METTL7BQ6UX53 244 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 SH2D5Q6ZV89 423 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 CCDC190Q86UF4 302 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 SMAP1Q8IYB5 467 aaPredicted RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 PM20D2Q8IYS1 436 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 GBGT1Q8N5D6 347 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 TRIM58Q8NG06 486 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 HM13Q8TCT9 377 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 ZNF473Q8WTR7 871 aaKnown RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 SLC44A1Q8WWI5 657 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 NUDCD1Q96RS6 583 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 PYGO2Q9BRQ0 406 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 PDZD7Q9H5P4 517 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 APOBEC3GQ9HC16 384 aaKnown RBP2.67□□□□□ -1.98
VPS35-207ENST00000568191 FGF22Q9HCT0 170 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 FBXW11Q9UKB1 542 aa2.67□□□□□ -1.98
VPS35-207ENST00000568191 A0A0J9YWU9 116 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 C1orf226A1L170 272 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 SERINC4A6NH21 518 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 TMEM178BH3BS89 294 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 TCERG1O14776 1098 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 GPC4O75487 556 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 EML2O95834 649 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 HIST1H2ABP04908 130 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 SPARCP09486 303 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 HIST1H2ADP20671 130 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 ABCD3P28288 659 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 MAP2K2P36507 400 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 NOVP48745 357 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 OLR1P78380 273 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 MBTD1Q05BQ5 628 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 TUBB2AQ13885 445 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 CXorf66Q5JRM2 361 aaPredicted RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 NDUFAF5Q5TEU4 345 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 PLXDC2Q6UX71 529 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 HIST3H2AQ7L7L0 130 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 GCSAMQ8N6F7 178 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 C1orf52Q8N6N3 182 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 TSPYL6Q8N831 410 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 PPHLN1Q8NEY8 458 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 MRGPRDQ8TDS7 321 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 FCAMRQ8WWV6 532 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 NR1H4Q96RI1 486 aaPredicted RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 NCAPGQ9BPX3 1015 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 RHNO1Q9BSD3 238 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 MCRIP2Q9BUT9 160 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 TUBB2BQ9BVA1 445 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 STRA6Q9BX79 667 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 ERVMER34-1Q9H9K5 563 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 RANGRFQ9HD47 186 aaPredicted RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 WASH6PQ9NQA3 447 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 COPG2Q9UBF2 871 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 MKLN1Q9UL63 735 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 KCNJ14Q9UNX9 436 aa2.66□□□□□ -1.98
VPS35-207ENST00000568191 MRPS28Q9Y2Q9 187 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 LRRFIP2Q9Y608 721 aaKnown RBP2.66□□□□□ -1.98
VPS35-207ENST00000568191 A0A1W2PP11 408 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 GPR137BO60478 399 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 TMCC2O75069 709 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 AGR2O95994 175 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 LIPFP07098 398 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 HMBSP08397 361 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 UBL4AP11441 157 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 ATP1A3P13637 1013 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 ZNF26P17031 533 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 TMEM11P17152 192 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 ITGA3P26006 1051 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 PIK3CAP42336 1068 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 HARS2P49590 506 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 CLK1P49759 484 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 F2RL1P55085 397 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 IRX6P78412 446 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 CSTF3Q12996 717 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 CDONQ4KMG0 1287 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 LCE1FQ5T754 118 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 ZDHHC20Q5W0Z9 365 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms