RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 DHX9Q08211 1270 aaKnown RBP19.29■□□□□ 0.68
CLN3-225ENST00000566824 LAMB3Q13751 1172 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 PPM1JQ5JR12 505 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 HP1BP3Q5SSJ5 553 aaPredicted RBP19.29■□□□□ 0.68
CLN3-225ENST00000566824 CASC4Q6P4E1 433 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 NLRP9Q7RTR0 991 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 PCGF5Q86SE9 256 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 LDB1Q86U70 411 aaPredicted RBP19.29■□□□□ 0.68
CLN3-225ENST00000566824 SLCO6A1Q86UG4 719 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 SLC35F3Q8IY50 421 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 BEND7Q8N7W2 519 aaPredicted RBP19.29■□□□□ 0.68
CLN3-225ENST00000566824 OR6P1Q8NGX9 317 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 SGF29Q96ES7 293 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 SLC32A1Q9H598 525 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 MRM3Q9HC36 420 aaKnown RBP19.29■□□□□ 0.68
CLN3-225ENST00000566824 IL1RAPL1Q9NZN1 696 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 TAAR2Q9P1P5 351 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 ANAPC5Q9UJX4 755 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 GPR34Q9UPC5 381 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 RP1P56715 2156 aa19.29■□□□□ 0.68
CLN3-225ENST00000566824 OR2AG2A6NM03 316 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 GOLGA8KD6RF30 607 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 GOLGA8TH3BQL2 631 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 TPP1O14773 563 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 CASC3O15234 703 aaKnown RBP19.28■□□□□ 0.68
CLN3-225ENST00000566824 ACRV1P26436 265 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 AKT1P31749 480 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 SIM1P81133 766 aaPredicted RBP19.28■□□□□ 0.68
CLN3-225ENST00000566824 MORF4L2Q15014 288 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 INAVAQ3KP66 663 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 GPR33Q49SQ1 333 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 C6orf132Q5T0Z8 1188 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 TMEM220Q6QAJ8 160 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 MAATS1Q7Z4T9 603 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 GKN2Q86XP6 184 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 KYQ8NBH2 561 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 FAM46DQ8NEK8 389 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 OR4L1Q8NH43 312 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 PATE1Q8WXA2 126 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 RMI1Q9H9A7 625 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 PLAC1Q9HBJ0 212 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 ZDHHC3Q9NYG2 299 aa19.28■□□□□ 0.68
CLN3-225ENST00000566824 IGLV3-16A0A075B6K0 115 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 NOBOXO60393 691 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 VAPBO95292 243 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 F7P08709 466 aaPredicted RBP19.27■□□□□ 0.68
CLN3-225ENST00000566824 MSH3P20585 1137 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ACTR1BP42025 376 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ARCN1P48444 511 aaKnown RBP19.27■□□□□ 0.68
CLN3-225ENST00000566824 ACTR1AP61163 376 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ILF3Q12906 894 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-225ENST00000566824 BBS9Q3SYG4 887 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ANKRD20A4Q4UJ75 823 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 AFTPHQ6ULP2 937 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 XKR5Q6UX68 686 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 GLRX5Q86SX6 157 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 LRRTM4Q86VH4 590 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 UNC5BQ8IZJ1 945 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 MMGT1Q8N4V1 131 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 LRRN4CLQ8ND94 238 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 PEX13Q92968 403 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ULK4Q96C45 1275 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 COPS8Q99627 209 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 CDC6Q99741 560 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 GSDMCQ9BYG8 508 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 GULP1Q9UBP9 304 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 DOLKQ9UPQ8 538 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 MAD1L1Q9Y6D9 718 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 PRSS21Q9Y6M0 314 aa19.27■□□□□ 0.68
CLN3-225ENST00000566824 ZCWPW2A0A1B0GU75 182 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 FAM237BA0A1B0GVD1 139 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 PRR19A6NJB7 356 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 B4DGG1 531 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 TNFSF14O43557 240 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 OR1I1O60431 355 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 ALPPL2P10696 532 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 ZNF7P17097 686 aaPredicted RBP19.26■□□□□ 0.67
CLN3-225ENST00000566824 PRAMEP78395 509 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 TUBB2AQ13885 445 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 CCDC157Q569K6 752 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 ZCCHC8Q6NZY4 707 aaKnown RBP19.26■□□□□ 0.67
CLN3-225ENST00000566824 LVRNQ6Q4G3 990 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 FAM83HQ6ZRV2 1179 aaPredicted RBP19.26■□□□□ 0.67
CLN3-225ENST00000566824 TRAPPC5Q8IUR0 188 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 CLDN19Q8N6F1 224 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 FAM181AQ8N9Y4 354 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 ZNF669Q96BR6 464 aaPredicted RBP19.26■□□□□ 0.67
CLN3-225ENST00000566824 TTC25Q96NG3 672 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 TUBB2BQ9BVA1 445 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 DPEP2Q9H4A9 486 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 KLC4Q9NSK0 619 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 TBC1D29Q9UFV1 150 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 DNAJC16Q9Y2G8 782 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 SPEGQ15772 3267 aa19.26■□□□□ 0.67
CLN3-225ENST00000566824 TRBV23OR9-2A0A075B6M9 112 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 ESYT3A0FGR9 886 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 KMOO15229 486 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 POP7O75817 140 aaKnown RBP19.25■□□□□ 0.67
CLN3-225ENST00000566824 CKMT2P17540 419 aa19.25■□□□□ 0.67
CLN3-225ENST00000566824 ACADVLP49748 655 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms