RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 UGT1A1P22309 533 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A4P22310 534 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 CSTF2P33240 577 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A3P35503 534 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 SPAM1P38567 509 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 GTF2H3Q13889 308 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 TGIF1Q15583 401 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 ANKRD20A2Q5SQ80 823 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 ANKRD20A1Q5TYW2 823 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 ANKRD20A3Q5VUR7 823 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 SYCE1Q8N0S2 351 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UBL4BQ8N7F7 174 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 BRSK1Q8TDC3 778 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 NCSTNQ92542 709 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 CCNL2Q96S94 520 aaPredicted RBP20.45■□□□□ 0.86
CLN3-219ENST00000565778 FICDQ9BVA6 458 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 GBA3Q9H227 469 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A7Q9HAW7 530 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A10Q9HAW8 530 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A8Q9HAW9 530 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 TMEM9Q9P0T7 183 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 CPNE7Q9UBL6 633 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 TMPRSS11EQ9UL52 423 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 SSUH2Q9Y2M2 353 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 AAR2Q9Y312 384 aaKnown RBP20.45■□□□□ 0.86
CLN3-219ENST00000565778 A6NCN8 305 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 STX7O15400 261 aaKnown RBP20.44■□□□□ 0.86
CLN3-219ENST00000565778 CSF2RBP32927 897 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 MAPK9P45984 424 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 CHRNA6Q15825 494 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 KHDC1Q4VXA5 237 aaKnown RBP20.44■□□□□ 0.86
CLN3-219ENST00000565778 SNAP47Q5SQN1 464 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 FAM151BQ6UXP7 276 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 TMEM139Q8IV31 216 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 AVL9Q8NBF6 648 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 AGBL5Q8NDL9 886 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 SLC39A7Q92504 469 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 TRIM10Q9UDY6 481 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 ACSL6Q9UKU0 697 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 PCDHB11Q9Y5F2 797 aa20.44■□□□□ 0.86
CLN3-219ENST00000565778 GLYATL1P3A0A0U1RQE8 302 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 GOLGA6L9A6NEM1 432 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 A8MU76 341 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 PDZK1P1A8MUH7 402 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 C9orf172C9J069 976 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 ATXN7O15265 892 aaPredicted RBP20.43■□□□□ 0.86
CLN3-219ENST00000565778 PPFIA2O75334 1257 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 FGF3P11487 239 aaPredicted RBP20.43■□□□□ 0.86
CLN3-219ENST00000565778 COL9A2Q14055 689 aaPredicted RBP20.43■□□□□ 0.86
CLN3-219ENST00000565778 SEPT7Q16181 437 aaKnown RBP20.43■□□□□ 0.86
CLN3-219ENST00000565778 ZFAND4Q86XD8 727 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 TRIM48Q8IWZ4 208 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 CCDC110Q8TBZ0 833 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 DTX3LQ8TDB6 740 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 TAAR9Q96RI9 348 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 APOL2Q9BQE5 337 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 TIMM29Q9BSF4 260 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 DESI2Q9BSY9 194 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 FOXJ2Q9P0K8 574 aa20.43■□□□□ 0.86
CLN3-219ENST00000565778 PACSIN2Q9UNF0 486 aaPredicted RBP20.43■□□□□ 0.86
CLN3-219ENST00000565778 C2orf81A6NN90 581 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 K7ENP7 123 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 FTCDO95954 541 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 VIPP01282 170 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 THRAP10827 490 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 LIPCP11150 499 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 VCLP18206 1134 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 XRCC1P18887 633 aaPredicted RBP20.42■□□□□ 0.86
CLN3-219ENST00000565778 LPOP22079 712 aaPredicted RBP20.42■□□□□ 0.86
CLN3-219ENST00000565778 IDSP22304 550 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 PSMB4P28070 264 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 CDC25BP30305 580 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 RHDQ02161 417 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 PTPRCAPQ14761 206 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 LDLRAP1Q5SW96 308 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 INO80CQ6PI98 192 aaPredicted RBP20.42■□□□□ 0.86
CLN3-219ENST00000565778 WDR74Q6RFH5 385 aaPredicted RBP20.42■□□□□ 0.86
CLN3-219ENST00000565778 RANBP10Q6VN20 620 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 TRAPPC5Q8IUR0 188 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 ZNF547Q8IVP9 402 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 TTC13Q8NBP0 860 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 CCDC112Q8NEF3 446 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 GORASP1Q9BQQ3 440 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 TBC1D10AQ9BXI6 508 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 B3GNT4Q9C0J1 378 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 SCHIP1Q9P0W5 487 aaPredicted RBP20.42■□□□□ 0.86
CLN3-219ENST00000565778 ARL5AQ9Y689 179 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 BPTFQ12830 3046 aa20.42■□□□□ 0.86
CLN3-219ENST00000565778 A0A0U1RQJ8 604 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 C5orf60A6NFR6 353 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 MIF4GDA9UHW6 222 aaKnown RBP20.41■□□□□ 0.86
CLN3-219ENST00000565778 TK2O00142 265 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 RPL10P27635 214 aaKnown RBP20.41■□□□□ 0.86
CLN3-219ENST00000565778 SLC19A1P41440 591 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 EPHA4P54764 986 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 ITGA9Q13797 1035 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 TAF1AQ15573 450 aaPredicted RBP20.41■□□□□ 0.86
CLN3-219ENST00000565778 TAF1BQ53T94 588 aaPredicted RBP20.41■□□□□ 0.86
CLN3-219ENST00000565778 FAM129CQ86XR2 697 aa20.41■□□□□ 0.86
CLN3-219ENST00000565778 LSM14AQ8ND56 463 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms