RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SLC1A1P43005 524 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 NR2C2P49116 596 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 GFERP55789 205 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 POLE2P56282 527 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 MAP7Q14244 749 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 PCSK7Q16549 785 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 KHDC1Q4VXA5 237 aaKnown RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 AGAP9Q5VTM2 703 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 CRTC3Q6UUV7 619 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 ABRAXAS1Q6UWZ7 409 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 MFSD7Q6UXD7 560 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 RFX6Q8HWS3 928 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 VSTM4Q8IW00 320 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 RHOT1Q8IXI2 618 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 DTX3LQ8TDB6 740 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 RNF25Q96BH1 459 aaPredicted RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 C9orf72Q96LT7 481 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 VPS35Q96QK1 796 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 OSGEPL1Q9H4B0 414 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 NHEJ1Q9H9Q4 299 aaPredicted RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 GPN2Q9H9Y4 310 aaPredicted RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 SPTLC3Q9NUV7 552 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 KLHL3Q9UH77 587 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 SLC30A1Q9Y6M5 507 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 PTPN13Q12923 2485 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 A0A0A6YYK5 440 aaPredicted RBP16.85■□□□□ 0.29
CLN3-216ENST00000565316 LOC285095A0A1B0GVY8 99 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 AURKAO14965 403 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 POLR1CO15160 346 aaPredicted RBP16.85■□□□□ 0.29
CLN3-216ENST00000565316 NKX2-8O15522 239 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 UBXN7O94888 489 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 VIPP01282 170 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 BRAFP15056 766 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 CDKN2BP42772 138 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 NOP2P46087 812 aaKnown RBP16.85■□□□□ 0.29
CLN3-216ENST00000565316 CCR10P46092 362 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 KCNAB2Q13303 367 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 INSCQ1MX18 579 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 CRTC2Q53ET0 693 aaPredicted RBP16.85■□□□□ 0.29
CLN3-216ENST00000565316 CCDC70Q6NSX1 233 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 B4GALNT4Q76KP1 1039 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 C11orf96Q7Z7L8 435 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 KIAA1143Q96AT1 154 aaPredicted RBP16.85■□□□□ 0.29
CLN3-216ENST00000565316 CCDC42Q96M95 316 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 TRIM4Q9C037 500 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 SLC40A1Q9NP59 571 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 INTUQ9ULD6 942 aa16.85■□□□□ 0.29
CLN3-216ENST00000565316 MFAP3LO75121 409 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 MTX2O75431 263 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 PMPCBO75439 489 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 CDK14O94921 469 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 EPOP01588 193 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 SLC4A1P02730 911 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 CD68P34810 354 aaPredicted RBP16.84■□□□□ 0.29
CLN3-216ENST00000565316 HMGCLP35914 325 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 STAT5AP42229 794 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 DYNLT1P63172 113 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 WASHC5Q12768 1159 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 PLA2G4EQ3MJ16 856 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 ATP13A5Q4VNC0 1218 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 KDELC1Q6UW63 502 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 BZW1Q7L1Q6 419 aaKnown RBP16.84■□□□□ 0.29
CLN3-216ENST00000565316 RBM12BQ8IXT5 1001 aaKnown RBP16.84■□□□□ 0.29
CLN3-216ENST00000565316 UNC5BQ8IZJ1 945 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 TTC30BQ8N4P2 665 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 TRABDQ9H4I3 376 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 POT1Q9NUX5 634 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 FAM153AQ9UHL3 310 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 DNAJC16Q9Y2G8 782 aa16.84■□□□□ 0.29
CLN3-216ENST00000565316 TYRP1P17643 537 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 IDSP22304 550 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 WNT3AP56704 352 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 CDC20Q12834 499 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 TMEM115Q12893 351 aaPredicted RBP16.83■□□□□ 0.28
CLN3-216ENST00000565316 TFDP2Q14188 446 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 PRSS42Q7Z5A4 293 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 TRIM48Q8IWZ4 208 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 ESX1Q8N693 406 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 TFB1MQ8WVM0 346 aaKnown RBP16.83■□□□□ 0.28
CLN3-216ENST00000565316 ZNF768Q9H5H4 540 aaKnown RBP16.83■□□□□ 0.28
CLN3-216ENST00000565316 BPIFA1Q9NP55 256 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 IL26Q9NPH9 171 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 UBP1Q9NZI7 540 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 SAE1Q9UBE0 346 aaPredicted RBP16.83■□□□□ 0.28
CLN3-216ENST00000565316 EPHA6Q9UF33 1036 aa16.83■□□□□ 0.28
CLN3-216ENST00000565316 PDZK1P1A8MUH7 402 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 MTSS1O43312 755 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 KCNJ13O60928 360 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 TPM1P09493 284 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 PECAM1P16284 738 aaPredicted RBP16.82■□□□□ 0.28
CLN3-216ENST00000565316 AMD1P17707 334 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 COMTP21964 271 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 RPL10P27635 214 aaKnown RBP16.82■□□□□ 0.28
CLN3-216ENST00000565316 CAPZBP47756 277 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 LEPRP48357 1165 aaKnown RBP16.82■□□□□ 0.28
CLN3-216ENST00000565316 MC1RQ01726 317 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 IL11RAQ14626 422 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 SEPT7Q16181 437 aaKnown RBP16.82■□□□□ 0.28
CLN3-216ENST00000565316 ODF2Q5BJF6 829 aa16.82■□□□□ 0.28
CLN3-216ENST00000565316 SIRPB2Q5JXA9 342 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms