RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZNF8P17098 575 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 CD38P28907 300 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 FMO4P31512 558 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 NSG1P42857 185 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 MSH2P43246 934 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 SLCO1A2P46721 670 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 LIMK2P53671 638 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ADARP55265 1226 aaKnown RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 TMEM115Q12893 351 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 LPAL2Q16609 132 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 GRTP1Q5TC63 336 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 PEAR1Q5VY43 1037 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 MACC1Q6ZN28 852 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 LKAAEAR1Q8TD35 194 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 HEXDCQ8WVB3 486 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 KLHDC7BQ96G42 594 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 DCUN1D1Q96GG9 259 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 WDR92Q96MX6 357 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 NDNQ99608 321 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 CCDC77Q9BR77 488 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ZCCHC2Q9C0B9 1178 aaKnown RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 CLPBQ9H078 707 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 TMEM74BQ9NUR3 256 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ZNF446Q9NWS9 450 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 TXNDC16Q9P2K2 825 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 SLC24A2Q9UI40 661 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 ZNF180Q9UJW8 692 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 PILRBQ9UKJ0 227 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 PNMA8BQ9ULN7 279 aaPredicted RBP16.38■□□□□ 0.21
VPS4A-202ENST00000562754 SLC17A4Q9Y2C5 497 aa16.38■□□□□ 0.21
VPS4A-202ENST00000562754 OR2AG2A6NM03 316 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 DYNC1I1O14576 645 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 PFDN6O15212 129 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 DNAJC6O75061 913 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 CDK14O94921 469 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 FUCA1P04066 466 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 IVLP07476 585 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 RALBP11234 206 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 ATP1B2P14415 290 aaPredicted RBP16.37■□□□□ 0.21
VPS4A-202ENST00000562754 THOP1P52888 689 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 IFFO1Q0D2I5 559 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 BMPR2Q13873 1038 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 FZD2Q14332 565 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 ADGRD1Q6QNK2 874 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 LRIG3Q6UXM1 1119 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 IQCHQ86VS3 1027 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 SPATS2Q86XZ4 545 aaKnown RBP16.37■□□□□ 0.21
VPS4A-202ENST00000562754 TDRPQ86YL5 185 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 SPNS2Q8IVW8 549 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 FAM174AQ8TBP5 190 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 OR1E3Q8WZA6 343 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 ZBTB9Q96C00 473 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 SGF29Q96ES7 293 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 PDXPQ96GD0 296 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 GPR22Q99680 433 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 AARSD1Q9BTE6 412 aaKnown RBP16.37■□□□□ 0.21
VPS4A-202ENST00000562754 TMEM109Q9BVC6 243 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 CAAP1Q9H8G2 361 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 PSMC3IPQ9P2W1 217 aaPredicted RBP16.37■□□□□ 0.21
VPS4A-202ENST00000562754 MED16Q9Y2X0 877 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 MTO1Q9Y2Z2 717 aaKnown RBP16.37■□□□□ 0.21
VPS4A-202ENST00000562754 CACNA1EQ15878 2313 aa16.37■□□□□ 0.21
VPS4A-202ENST00000562754 PI4KAP42356 2102 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 FAM95CA0A1B0GW59 222 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 DLL1O00548 723 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 RASGRF2O14827 1237 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 CHUKO15111 745 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 NUAK1O60285 661 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 NIPSNAP2O75323 286 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 SASH3O75995 380 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 AP2A2O94973 939 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 ESR1P03372 595 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 ITGA2BP08514 1039 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PKMP14618 531 aaKnown RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 SPRP35270 261 aaPredicted RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 CSNK1EP49674 416 aaKnown RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PRLHRP49683 370 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 TIAL1Q01085 375 aaKnown RBP eCLIP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 OVGP1Q12889 678 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 ALG11Q2TAA5 492 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 BCL7AQ4VC05 210 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 CRTC3Q6UUV7 619 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 ENPP7Q6UWV6 458 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 HDXQ7Z353 690 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 ZNF547Q8IVP9 402 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 KRT222Q8N1A0 295 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 BEND7Q8N7W2 519 aaPredicted RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 GPATCH11Q8N954 259 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 OR56A4Q8NGH8 313 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PIGKQ92643 395 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 SCARF2Q96GP6 870 aaPredicted RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 OLFM1Q99784 485 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PPCSQ9HAB8 311 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 MRPL40Q9NQ50 206 aaKnown RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 GNPTGQ9UJJ9 305 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 CORO1CQ9ULV4 474 aaPredicted RBP16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PRKAB1Q9Y478 270 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 PCDHB1Q9Y5F3 818 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 IKBKGQ9Y6K9 419 aa16.36■□□□□ 0.21
VPS4A-202ENST00000562754 KNL1Q8NG31 2342 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms