RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 EFCAB1Q9HAE3 211 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 IL26Q9NPH9 171 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 HCFC1R1Q9NWW0 138 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 STOML1Q9UBI4 398 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 INTS6Q9UL03 887 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 SCML1Q9UN30 329 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 TRAF6Q9Y4K3 522 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ZNF106Q9H2Y7 1883 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 ZNF839A8K0R7 811 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 WNT9AO14904 365 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 AZIN1O14977 448 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 UBDO15205 165 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SMAD6O43541 496 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 ITM2AO43736 263 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 AP1G1O43747 822 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 VEGFDO43915 354 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 NUAK1O60285 661 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 KDM1AO60341 852 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 KCNJ13O60928 360 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ATG13O75143 517 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 TULP3O75386 442 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ECI2O75521 394 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ZNF821O75541 412 aaPredicted RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 TM7SF2O76062 418 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ADH1BP00325 375 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 MT-CO1P00395 513 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 RPN2P04844 631 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 APODP05090 189 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 UGT2B4P06133 528 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ELFN1P0C7U0 828 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 PIRTP0C851 137 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ATP1B2P14415 290 aaPredicted RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 BPIP17213 487 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 DDX5P17844 614 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 PSMC3P17980 439 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 AKT1P31749 480 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 BMP8BP34820 402 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 PGM1P36871 562 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 GRIA2P42262 883 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 NRIP1P48552 1158 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CLCN7P51798 805 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CREB5Q02930 508 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CLCQ05315 142 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 DPTQ07507 201 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 FOXM1Q08050 763 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CAMK1Q14012 370 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SEMA3AQ14563 771 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 IHHQ14623 411 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 TGFBIQ15582 683 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CDKN3Q16667 212 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SLC5A9Q2M3M2 681 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 FNDC3BQ53EP0 1204 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 PSAPL1Q6NUJ1 521 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 AAGABQ6PD74 315 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 PAQR3Q6TCH7 311 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 FAM151BQ6UXP7 276 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 HACD2Q6Y1H2 254 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 GPRIN3Q6ZVF9 776 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 Q6ZVU0 165 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CHSY3Q70JA7 882 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 TERB1Q8NA31 727 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 TTC16Q8NEE8 873 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 MCOLN3Q8TDD5 553 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 STARD8Q92502 1023 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SUSD6Q92537 303 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 FGF13Q92913 245 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 GLMNQ92990 594 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 BHMTQ93088 406 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 WBP2Q969T9 261 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ROPN1LQ96C74 230 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SLC7A6OSQ96CW6 309 aaPredicted RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 TCEAL4Q96EI5 215 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 HDAC8Q9BY41 377 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 MRPL1Q9BYD6 325 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 TNKS2Q9H2K2 1166 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 C12orf65Q9H3J6 166 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 MUC13Q9H3R2 512 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 GSTO2Q9H4Y5 243 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 SUDS3Q9H7L9 328 aaPredicted RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 ZBTB26Q9HCK0 441 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ZDHHC4Q9NPG8 344 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 PLK2Q9NYY3 685 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 NOP53Q9NZM5 478 aaKnown RBP7.43□□□□□ -1.22
VPS39-204ENST00000561818 CD274Q9NZQ7 290 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 POLG2Q9UHN1 485 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ANGPTL2Q9UKU9 493 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 FAM50BQ9Y247 325 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CCL26Q9Y258 94 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 ANGPTL3Q9Y5C1 460 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 WNT6Q9Y6F9 365 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 CEP350Q5VT06 3117 aa7.43□□□□□ -1.22
VPS39-204ENST00000561818 C17orf113A0A1B0GUU1 675 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 OR51F1A6NGY5 319 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 NPIPB15A6NHN6 443 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 HEPACAM2A8MVW5 462 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 B2RBV5 119 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 K7ERQ8 282 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 ZNF195O14628 629 aa7.42□□□□□ -1.22
VPS39-204ENST00000561818 LIN7AO14910 233 aaPredicted RBP7.42□□□□□ -1.22
VPS39-204ENST00000561818 AURKAO14965 403 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms