RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 FUT11Q495W5 492 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 PIK3R6Q5UE93 754 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 XAF1Q6GPH4 301 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 MOB2Q70IA6 237 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZDHHC13Q8IUH4 622 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 CLEC4FQ8N1N0 589 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF555Q8NEP9 628 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 OR52E4Q8NGH9 312 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ITFG1Q8TB96 612 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SEPHS2Q99611 448 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 WDR12Q9GZL7 423 aaKnown RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 GORASP2Q9H8Y8 452 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SEMA4BQ9NPR2 832 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 TLR9Q9NR96 1032 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ARL5CA6NH57 179 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 LRRC14BA6NHZ5 514 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 C9JVG2 144 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 J3KR12 359 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 K7EPI3 171 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 PFDN6O15212 129 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 ZBTB7AO95365 584 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 MOCS2O96007 188 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-231ENST00000557433 GGT1P19440 569 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 OCA2Q04671 838 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 ATP6AP1LQ52LC2 224 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 GPRIN3Q6ZVF9 776 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 NEK10Q6ZWH5 1172 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 SYVN1Q86TM6 617 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 TLK2Q86UE8 772 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 SPATA2LQ8IUW3 424 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-231ENST00000557433 SLC15A4Q8N697 577 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 PJA1Q8NG27 643 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF382Q96SR6 550 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 TMLHEQ9NVH6 421 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 DNAJB9Q9UBS3 223 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 PCTPQ9UKL6 214 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 ANKRD36A6QL64 1941 aa16.12■□□□□ 0.17
SHMT2-231ENST00000557433 TMX2-CTNND1H3BSU7 103 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TFPTP0C1Z6 253 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TYMPP19971 482 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PSMA3P25788 255 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 POLR2IP36954 125 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 APLP1P51693 650 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 YBEYP58557 167 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 YBX1P67809 324 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 YWHAHQ04917 246 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 MTA1Q13330 715 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 IL18R1Q13478 541 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TIGD2Q4W5G0 525 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 C6orf136Q5SQH8 315 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TBPL2Q6SJ96 375 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 AFTPHQ6ULP2 937 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PLEKHH3Q7Z736 793 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 MRPL10Q7Z7H8 261 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 MON1AQ86VX9 555 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SPARTQ8N0X7 666 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 ATP6V0D2Q8N8Y2 350 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SH3RF2Q8TEC5 729 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 GIPC2Q8TF65 315 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 S100ZQ8WXG8 99 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TMBIM1Q969X1 311 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 FUBP1Q96AE4 644 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TEX37Q96LM6 180 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 KLHL5Q96PQ7 755 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 HGH1Q9BTY7 390 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 HMG20AQ9NP66 347 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 MIOSQ9NXC5 875 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SELENONQ9NZV5 590 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 CACNG4Q9UBN1 327 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 KCTD3Q9Y597 815 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 CLDN25C9JDP6 229 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PDHXO00330 501 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 CCL22O00626 93 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SYNCRIPO60506 623 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 FOXD2O60548 495 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 FUCA1P04066 466 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 ITIH1P19827 911 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 ELK4P28324 431 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 GJA5P36382 358 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 YAP1P46937 504 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TBX4P57082 545 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 OR4D2P58180 307 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 MRPS6P82932 125 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PWP1Q13610 501 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 OTUD3Q5T2D3 398 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 LDLRAD1Q5T700 205 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 OVOS1Q6IE37 1185 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 GALNT18Q6P9A2 607 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 DLEU7Q6UYE1 221 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PDZD8Q8NEN9 1154 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PROKR1Q8TCW9 393 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PSMG2Q969U7 264 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 UROC1Q96N76 676 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TMEM74Q96NL1 305 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 CGREF1Q99674 301 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 RBM4BQ9BQ04 359 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 RBM4Q9BWF3 364 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 LHPPQ9H008 270 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 INTS7Q9NVH2 962 aaKnown RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 ATAD3AQ9NVI7 634 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms