RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CTAGE15A4D2H0 777 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 OR2AG2A6NM03 316 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 CHUKO15111 745 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 LDOC1O95751 146 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-225ENST00000556798 CTAGE8P0CG41 777 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 ACRV1P26436 265 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 ACTR1BP42025 376 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 ACTR1AP61163 376 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 B4GALNT1Q00973 533 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 SLC7A5Q01650 507 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 DNAJC3Q13217 504 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 SEMA3AQ14563 771 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 TRIP6Q15654 476 aaKnown RBP17.26■□□□□ 0.35
SHMT2-225ENST00000556798 DBN1Q16643 649 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 BBS9Q3SYG4 887 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 GPR33Q49SQ1 333 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 C6orf132Q5T0Z8 1188 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 CTAGE6Q86UF2 777 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 LRRTM4Q86VH4 590 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 ZNF547Q8IVP9 402 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 SFTPA2Q8IWL1 248 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 CTAGE4Q8IX94 777 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 OR4L1Q8NH43 312 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 APOLD1Q96LR9 279 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 LRRC1Q9BTT6 524 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 DUSP23Q9BVJ7 150 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 BOCQ9BWV1 1114 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 KCNK6Q9Y257 313 aa17.26■□□□□ 0.35
SHMT2-225ENST00000556798 UTP11Q9Y3A2 253 aaKnown RBP17.26■□□□□ 0.35
SHMT2-225ENST00000556798 RP1P56715 2156 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 B4DGG1 531 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GPR89AB7ZAQ6 455 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GOLGA8KD6RF30 607 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GOLGA8TH3BQL2 631 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 TPP1O14773 563 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GPR89BP0CG08 455 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 CEACAM1P13688 526 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 ARNTP27540 789 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 TRADDQ15628 312 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 PROX2Q3B8N5 592 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 HP1BP3Q5SSJ5 553 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 DUPD1Q68J44 220 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 ZCCHC8Q6NZY4 707 aaKnown RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 LDB1Q86U70 411 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 BEND7Q8N7W2 519 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 KYQ8NBH2 561 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 FAM46DQ8NEK8 389 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 SGF29Q96ES7 293 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 STAMBPL1Q96FJ0 436 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 DCUN1D1Q96GG9 259 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 FCRL3Q96P31 734 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 COPS8Q99627 209 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 CDC6Q99741 560 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 CARD6Q9BX69 1037 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 RAB17Q9H0T7 212 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 SPATS2LQ9NUQ6 558 aaKnown RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 ZDHHC3Q9NYG2 299 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GRHL1Q9NZI5 618 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 IL1RAPL1Q9NZN1 696 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 TAAR2Q9P1P5 351 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 WHRNQ9P202 907 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 MARCH4Q9P2E8 410 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-225ENST00000556798 GPR34Q9UPC5 381 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 DNAJC16Q9Y2G8 782 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 RPS6KL1Q9Y6S9 549 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 SPTBN2O15020 2390 aa17.25■□□□□ 0.35
SHMT2-225ENST00000556798 ASXL3Q9C0F0 2248 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 LY6G6EA0A0G2JKS1 128 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 FAM237BA0A1B0GVD1 139 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 ESYT3A0FGR9 886 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 KMOO15229 486 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 VAPBO95292 243 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 PBLDP30039 288 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 SIM1P81133 766 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 DAB2P98082 770 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 CALCOCO2Q13137 446 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 LRP8Q14114 963 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 HIF1AQ16665 826 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 INSCQ1MX18 579 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 ANKRD20A4Q4UJ75 823 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 FASTKD1Q53R41 847 aaKnown RBP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 CCDC157Q569K6 752 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 DNAJC21Q5F1R6 531 aaKnown RBP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 PPM1JQ5JR12 505 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 TMEM220Q6QAJ8 160 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 SLC35F3Q8IY50 421 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 PDIK1LQ8N165 341 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 SDR16C5Q8N3Y7 309 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 MMGT1Q8N4V1 131 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 OTUD6BQ8N6M0 293 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 BBOF1Q8ND07 529 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 SCG3Q8WXD2 468 aaKnown RBP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHMT2-225ENST00000556798 DPEP2Q9H4A9 486 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 KLC4Q9NSK0 619 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 CATSPERZQ9NTU4 200 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 GULP1Q9UBP9 304 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 SLC23A2Q9UGH3 650 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 U3KQA8 63 aa17.24■□□□□ 0.35
SHMT2-225ENST00000556798 IGLV3-16A0A075B6K0 115 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms