RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RNASEH2AO75792 299 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CCNDBP1O95273 360 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 ACADMP11310 421 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 BDNFP23560 247 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CDAP32320 146 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CTCFP49711 727 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 HNRNPH2P55795 449 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 RPL24P83731 157 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 TMEM115Q12893 351 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CCNG2Q16589 344 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 HIST2H2ACQ16777 129 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 KRT24Q2M2I5 525 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 SLC45A4Q5BKX6 768 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 SPATA1Q5VX52 437 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 LRRC8EQ6NSJ5 796 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 RBMS3Q6XE24 437 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CPLX4Q7Z7G2 160 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 KIAA2013Q8IYS2 634 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 SCCPDHQ8NBX0 429 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 TMEM116Q8NCL8 245 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 PSPC1Q8WXF1 523 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 FAM149B1Q96BN6 582 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 INTS12Q96CB8 462 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 PABPC5Q96DU9 382 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 ZC3HAV1LQ96H79 300 aaKnown RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 IWS1Q96ST2 819 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CMKLR1Q99788 373 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 MXRA8Q9BRK3 442 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 H2AFJQ9BTM1 129 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 PRKRIP1Q9H875 184 aaPredicted RBP2.98□□□□□ -1.93
SCFD1-218ENST00000556256 C2orf42Q9NWW7 574 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 BARHL2Q9NY43 387 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 CTNNAL1Q9UBT7 734 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 MKLN1Q9UL63 735 aa2.98□□□□□ -1.93
SCFD1-218ENST00000556256 A0A0G2JLW4 131 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 A0A1W2PRG0 241 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 LIPT2A6NK58 231 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 USP17L23D6RBM5 183 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 SYNGR3O43761 229 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ZBED4O75132 1171 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 MT-CYBP00156 380 aaPredicted RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 IRF1P10914 325 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 PCNAP12004 261 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 CDH2P19022 906 aaPredicted RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 SHMT1P34896 483 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 PBX3P40426 434 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 PIP4K2AP48426 406 aaPredicted RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 RARSP54136 660 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 FGFBP1Q14512 234 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ZNF234Q14588 700 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 VEPH1Q14D04 833 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 MEA1Q16626 185 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 EIF2S3LQ2VIR3 472 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 SNAI3Q3KNW1 292 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 SGO1Q5FBB7 561 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 TECRLQ5HYJ1 363 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 TCTEX1D4Q5JR98 221 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 FAM205BPQ63HN1 556 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ZNF774Q6NX45 483 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 NCEH1Q6PIU2 408 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 CYP20A1Q6UW02 462 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 BRINP3Q76B58 766 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 NOXA1Q86UR1 476 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 DDHD1Q8NEL9 900 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 OR2AK2Q8NG84 335 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 USP6NLQ92738 828 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ZNF570Q96NI8 536 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 PCYT2Q99447 389 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 MTERF1Q99551 399 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 MCRIP2Q9BUT9 160 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 NUF2Q9BZD4 464 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 TKTL2Q9H0I9 626 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 MKKSQ9NPJ1 570 aaPredicted RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 DDX4Q9NQI0 724 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ASAH2Q9NR71 780 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 KRT84Q9NSB2 600 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 DIAPH3Q9NSV4 1193 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 LIMA1Q9UHB6 759 aaKnown RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 FBXO9Q9UK97 447 aaPredicted RBP2.97□□□□□ -1.93
SCFD1-218ENST00000556256 KCNE2Q9Y6J6 123 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 ATRXP46100 2492 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 DISP3Q9P2K9 1392 aa2.97□□□□□ -1.93
SCFD1-218ENST00000556256 FSD2A1L4K1 749 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 ANKRD18BA2A2Z9 1011 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 LRRC53A6NM62 1247 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 KRTAP5-8O75690 187 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 EIF2S1P05198 315 aaKnown RBP2.96□□□□□ -1.94
SCFD1-218ENST00000556256 SPARCP09486 303 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 HOXA13P31271 388 aaPredicted RBP2.96□□□□□ -1.94
SCFD1-218ENST00000556256 HOXD13P35453 343 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 MAP2K2P36507 400 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 GNAQP50148 359 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 CSTF3Q12996 717 aaKnown RBP2.96□□□□□ -1.94
SCFD1-218ENST00000556256 MAMLD1Q13495 774 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 OLIG2Q13516 323 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 MED22Q15528 200 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 TCTN1Q2MV58 587 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 CFAP161Q6P656 301 aa2.96□□□□□ -1.94
SCFD1-218ENST00000556256 CPLX2Q6PUV4 134 aaKnown RBP2.96□□□□□ -1.94
SCFD1-218ENST00000556256 QSOX2Q6ZRP7 698 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms