RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 MPOP05164 745 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 ATP1B2P14415 290 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 MSH3P20585 1137 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CRABP2P29373 138 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CRHR1P34998 444 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 NSG1P42857 185 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 RPS9P46781 194 aaKnown RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 GUCY1A3Q02108 690 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 SIGLEC14Q08ET2 396 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 SFSWAPQ12872 951 aaKnown RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 CSHL1Q14406 222 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 ITIH4Q14624 930 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 INPP5AQ14642 412 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 IRF4Q15306 451 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CWF19L1Q69YN2 538 aaKnown RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 KIAA1161Q6NSJ0 714 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 PAQR3Q6TCH7 311 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CENPLQ8N0S6 344 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 BEND7Q8N7W2 519 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 TP53I13Q8NBR0 393 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 DDHD1Q8NEL9 900 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 GIMAP7Q8NHV1 300 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 DENND1AQ8TEH3 1009 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 EDAQ92838 391 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CENPTQ96BT3 561 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 NXNL1Q96CM4 212 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 DCUN1D1Q96GG9 259 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 TOE1Q96GM8 510 aaKnown RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 FAM111AQ96PZ2 611 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 VPS35Q96QK1 796 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 C1QTNF1Q9BXJ1 281 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 C6orf106Q9H6K1 298 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 SSU72Q9NP77 194 aaKnown RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 TAS2R13Q9NYV9 303 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 TMEM216Q9P0N5 145 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 CORO1CQ9ULV4 474 aaPredicted RBP10.09□□□□□ -0.79
SRP54-208ENST00000555557 ACOT9Q9Y305 439 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 OR1A2Q9Y585 309 aa10.09□□□□□ -0.79
SRP54-208ENST00000555557 SEMA4FO95754 770 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 CCDC166P0CW27 439 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 RPS3P23396 243 aaKnown RBP eCLIP10.08□□□□□ -0.88e-6■■□□□ 12.6
SRP54-208ENST00000555557 GLRBP48167 497 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 CTSCP53634 463 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 WDR4P57081 412 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 TMEM115Q12893 351 aaPredicted RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 PDAP1Q13442 181 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 TAF1BQ53T94 588 aaPredicted RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 LDLRAP1Q5SW96 308 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 N4BP2L1Q5TBK1 243 aaPredicted RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 MACC1Q6ZN28 852 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 CLEC14AQ86T13 490 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 NLRP8Q86W28 1048 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 HEATR4Q86WZ0 1026 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 PHYKPLQ8IUZ5 450 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 ARFGAP2Q8N6H7 521 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 RASGEF1AQ8N9B8 481 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 OR2T34Q8NGX1 318 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 TSPAN17Q96FV3 270 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 UHRF1Q96T88 793 aaPredicted RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 IQCGQ9H095 443 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 KDM4CQ9H3R0 1056 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 EBF2Q9HAK2 575 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 SGK2Q9HBY8 427 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 NKIRAS1Q9NYS0 192 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 GNPTGQ9UJJ9 305 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 TSR3Q9UJK0 312 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 ADAM21Q9UKJ8 722 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 GRID1Q9ULK0 1009 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 RUVBL2Q9Y230 463 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 CA5BQ9Y2D0 317 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 TMEM98Q9Y2Y6 226 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 PLLPQ9Y342 182 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 PCDHB1Q9Y5F3 818 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 ZNF106Q9H2Y7 1883 aaKnown RBP10.08□□□□□ -0.8
SRP54-208ENST00000555557 DNAH14Q0VDD8 3507 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 PLXNA2O75051 1894 aa10.08□□□□□ -0.8
SRP54-208ENST00000555557 WDR91A4D1P6 747 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 LRRC72A6NJI9 287 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 SGTAO43765 313 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 VPS26AO75436 327 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 CDK14O94921 469 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 WISP3O95389 354 aaPredicted RBP10.07□□□□□ -0.8
SRP54-208ENST00000555557 APBB3O95704 486 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 CXCL12P48061 93 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 CLCN7P51798 805 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 CLDN2P57739 230 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 AGERQ15109 404 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 SEPT7Q16181 437 aaKnown RBP10.07□□□□□ -0.8
SRP54-208ENST00000555557 MAP7D1Q3KQU3 841 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 NEK5Q6P3R8 708 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 DOK6Q6PKX4 331 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 LVRNQ6Q4G3 990 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 TSSK4Q6SA08 328 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 ADGRG6Q86SQ4 1221 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 TAX1BP1Q86VP1 789 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 DEFB119Q8N690 84 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 ARMC2Q8NEN0 867 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 CD200R1Q8TD46 325 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 HEXDCQ8WVB3 486 aa10.07□□□□□ -0.8
SRP54-208ENST00000555557 KCNJ9Q92806 393 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms