RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 FOXR1Q6PIV2 292 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 TRAPPC5Q8IUR0 188 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 RASGEF1AQ8N9B8 481 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 WDR36Q8NI36 951 aaKnown RBP20.21■□□□□ 0.83
VTI1B-205ENST00000555543 DCBLD2Q96PD2 775 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 TIMM29Q9BSF4 260 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 SCHIP1Q9P0W5 487 aaPredicted RBP20.21■□□□□ 0.83
VTI1B-205ENST00000555543 FEZ2Q9UHY8 353 aaPredicted RBP20.21■□□□□ 0.83
VTI1B-205ENST00000555543 ZNF148Q9UQR1 794 aa20.21■□□□□ 0.83
VTI1B-205ENST00000555543 A0A087WV48 116 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 IGHV1OR21-1A0A087WYE8 117 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 CRTAMO95727 393 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 FGGP02679 453 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 ETS1P14921 441 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 TPH1P17752 444 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 CD1CP29017 333 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 STIP1P31948 543 aaKnown RBP20.2■□□□□ 0.82
VTI1B-205ENST00000555543 CXCR5P32302 372 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 CSF2RBP32927 897 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 ACTN2P35609 894 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 GPR3P46089 330 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 TMPRSS15P98073 1019 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 HHEXQ03014 270 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 LDLRAP1Q5SW96 308 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 NKAIN2Q5VXU1 208 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 C19orf48Q6RUI8 117 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 IGF2-ASQ6U949 168 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 USP53Q70EK8 1073 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 ZNF398Q8TD17 642 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 NAT14Q8WUY8 206 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 FGF11Q92914 225 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 CCDC97Q96F63 343 aaPredicted RBP20.2■□□□□ 0.82
VTI1B-205ENST00000555543 DNAJC1Q96KC8 554 aaKnown RBP20.2■□□□□ 0.82
VTI1B-205ENST00000555543 TMEM74Q96NL1 305 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 SEMA6CQ9H3T2 930 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 SARS2Q9NP81 518 aaKnown RBP20.2■□□□□ 0.82
VTI1B-205ENST00000555543 PCDHGA8Q9Y5G5 932 aa20.2■□□□□ 0.82
VTI1B-205ENST00000555543 AGRPO00253 132 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 SRP72O76094 671 aaKnown RBP20.19■□□□□ 0.82
VTI1B-205ENST00000555543 CPNE6O95741 557 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 HGFP14210 728 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 EIF2S3P41091 472 aaKnown RBP20.19■□□□□ 0.82
VTI1B-205ENST00000555543 CFHR1Q03591 330 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 NFATC2Q13469 925 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 GTF2H3Q13889 308 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 POU6F1Q14863 301 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 ZNF574Q6ZN55 896 aaPredicted RBP20.19■□□□□ 0.82
VTI1B-205ENST00000555543 LSMEM2Q8N112 164 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 HNRNPLLQ8WVV9 542 aaKnown RBP20.19■□□□□ 0.82
VTI1B-205ENST00000555543 LRRC45Q96CN5 670 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 SLC46A1Q96NT5 459 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 KCNF1Q9H3M0 494 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 ETNK1Q9HBU6 452 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 KCNK4Q9NYG8 393 aa20.19■□□□□ 0.82
VTI1B-205ENST00000555543 OR2AG2A6NM03 316 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 ZSCAN5DPP0CG00 497 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 HOXB3P14651 431 aaPredicted RBP20.18■□□□□ 0.82
VTI1B-205ENST00000555543 BRAFP15056 766 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 UBE2IP63279 158 aaKnown RBP20.18■□□□□ 0.82
VTI1B-205ENST00000555543 PDE1BQ01064 536 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 SEPT7Q16181 437 aaKnown RBP20.18■□□□□ 0.82
VTI1B-205ENST00000555543 CCNG2Q16589 344 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 RAB11FIP2Q7L804 512 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 PIM3Q86V86 326 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 OR52K1Q8NGK4 314 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 ZNF578Q96N58 590 aaPredicted RBP20.18■□□□□ 0.82
VTI1B-205ENST00000555543 TTC25Q96NG3 672 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 ZCCHC2Q9C0B9 1178 aaKnown RBP20.18■□□□□ 0.82
VTI1B-205ENST00000555543 STRADBQ9C0K7 418 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 ASB8Q9H765 288 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 TMEM9Q9P0T7 183 aa20.18■□□□□ 0.82
VTI1B-205ENST00000555543 KIR2DS5A0A0G2JLQ3 304 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 A0A0G2JNG1 304 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 AGAP14A8MT82 685 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 CDRT15L2A8MXV6 281 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 TMX2-CTNND1H3BSU7 103 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 KIR2DS3K7RE56 304 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 PLD2O14939 933 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 PSMD3O43242 534 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 CEP104O60308 925 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 TNFSF15O95150 251 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 SLC2A4P14672 509 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 RPL10P27635 214 aaKnown RBP20.17■□□□□ 0.82
VTI1B-205ENST00000555543 ITPKBP27987 946 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 AKT1P31749 480 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 DRG2P55039 364 aaKnown RBP20.17■□□□□ 0.82
VTI1B-205ENST00000555543 ERVPABLB-1P60509 514 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 SEPT6Q14141 434 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 GSE1Q14687 1217 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 KIR2DS5Q14953 304 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 KCTD19Q17RG1 926 aaPredicted RBP20.17■□□□□ 0.82
VTI1B-205ENST00000555543 PHF19Q5T6S3 580 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 DET1Q7L5Y6 550 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 SLC9B2Q86UD5 537 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 REXO1L1PQ8IX06 675 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 SLC38A3Q99624 504 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 FAM96AQ9H5X1 160 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 CPNE7Q9UBL6 633 aa20.17■□□□□ 0.82
VTI1B-205ENST00000555543 RALYQ9UKM9 306 aaKnown RBP20.17■□□□□ 0.82
VTI1B-205ENST00000555543 LOXL2Q9Y4K0 774 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms