RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 OLR1P78380 273 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 PRAMEP78395 509 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 EFNB1P98172 346 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CEBPZQ03701 1054 aaKnown RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 YWHAHQ04917 246 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 TFCP2Q12800 502 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 TNFAIP1Q13829 316 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RUNX2Q13950 521 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 IRF3Q14653 427 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ADIPOQQ15848 244 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 LPAL2Q16609 132 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 PRICKLE4Q2TBC4 344 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 LETM2Q2VYF4 491 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 IGSF11Q5DX21 431 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 TCP11X2Q5H9J9 407 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ZNF766Q5HY98 468 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RAB41Q5JT25 222 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 C9orf152Q5JTZ5 239 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 PLEKHS1Q5SXH7 462 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 GARNL3Q5VVW2 1013 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ARHGAP17Q68EM7 881 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ADALQ6DHV7 355 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 NCAPH2Q6IBW4 605 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 KRT80Q6KB66 452 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CDC73Q6P1J9 531 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 NCEH1Q6PIU2 408 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CASC1Q6TDU7 716 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 SUSD1Q6UWL2 747 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 PLPPR4Q7Z2D5 763 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 METTL23Q86XA0 190 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 TMC8Q8IU68 726 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 BRSK2Q8IWQ3 736 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CCDC105Q8IYK2 499 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ADGRF2Q8IZF7 708 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CCAR2Q8N163 923 aaKnown RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 ARL6IP6Q8N6S5 226 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 C10orf53Q8N6V4 93 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 PTGR2Q8N8N7 351 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 TMEM116Q8NCL8 245 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CADM4Q8NFZ8 388 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 KIF18AQ8NI77 898 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 SETD6Q8TBK2 473 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 UTP15Q8TED0 518 aaKnown RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 PRPF31Q8WWY3 499 aaKnown RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 ARHGEF2Q92974 986 aaKnown RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 ZKSCAN4Q969J2 545 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 MASTLQ96GX5 879 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CCDC114Q96M63 670 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RUNDC3BQ96NL0 473 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RAB3IPQ96QF0 476 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 TSPAN18Q96SJ8 248 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 DCTN5Q9BTE1 182 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.3□□□□□ -2.04
SRP54-204ENST00000553923 HEMGNQ9BXL5 484 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 TEX12Q9BXU0 123 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 FAM129AQ9BZQ8 928 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ABCG4Q9H172 646 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 EPHX3Q9H6B9 360 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 COPS7BQ9H9Q2 264 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 POLR1BQ9H9Y6 1135 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 LTB4R2Q9NPC1 389 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.3□□□□□ -2.04
SRP54-204ENST00000553923 THAP1Q9NVV9 213 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 SMARCAL1Q9NZC9 954 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 WDR35Q9P2L0 1181 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 SUCLA2Q9P2R7 463 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 PEMTQ9UBM1 199 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CTNNAL1Q9UBT7 734 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 SLC25A10Q9UBX3 287 aaPredicted RBP2.3□□□□□ -2.04
SRP54-204ENST00000553923 NENFQ9UMX5 172 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RABL2BQ9UNT1 228 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 AGTPBP1Q9UPW5 1226 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 KLHL20Q9Y2M5 609 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 ADGRF5Q8IZF2 1346 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 KDM3AQ9Y4C1 1321 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 RUSC2Q8N2Y8 1516 aa2.3□□□□□ -2.04
SRP54-204ENST00000553923 CGNL1Q0VF96 1302 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 A0A096LPK6 155 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 A0A1W2PNU3 283 aaPredicted RBP2.29□□□□□ -2.04
SRP54-204ENST00000553923 TARSL2A2RTX5 802 aaKnown RBP2.29□□□□□ -2.04
SRP54-204ENST00000553923 KRT87PA6NCN2 255 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 CCDC69A6NI79 296 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 FAM90A7PA6NKC0 464 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 TRIM64CA6NLI5 447 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 KRTAP16-1A8MUX0 517 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 FAM90A22PA8MWA6 464 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 FAM90A12PA8MX19 464 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 A8MXE2 369 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 FAM90A23PA8MXZ1 464 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 DDX39AO00148 427 aaKnown RBP2.29□□□□□ -2.04
SRP54-204ENST00000553923 LDLRAD4O15165 306 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 BCAT2O15382 392 aaPredicted RBP2.29□□□□□ -2.04
SRP54-204ENST00000553923 KERAO60938 352 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 TACC1O75410 805 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 CRLF1O75462 422 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 GAGE7O76087 117 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 SEC31AO94979 1220 aaKnown RBP2.29□□□□□ -2.04
SRP54-204ENST00000553923 VNN2O95498 520 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 CLDN14O95500 239 aa2.29□□□□□ -2.04
SRP54-204ENST00000553923 IGHDP01880 384 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms