RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PTGR2Q8N8N7 351 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PAPD5Q8NDF8 572 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 WNT8BQ93098 351 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 PABPC5Q96DU9 382 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CNDP2Q96KP4 475 aaKnown RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 DHRS1Q96LJ7 313 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GAD1Q99259 594 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 MYOCQ99972 504 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 TBL1YQ9BQ87 522 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 HOXD1Q9GZZ0 328 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC68Q9H2F9 335 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 IKZF5Q9H5V7 419 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 WDCPQ9H6R7 721 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 SEMA4BQ9NPR2 832 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ABCB10Q9NRK6 738 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 QPCTLQ9NXS2 382 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 RCOR3Q9P2K3 495 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ERVK-18Q9QC07 812 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 OR12D3Q9UGF7 316 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF112Q9UJU3 913 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 NEUROG3Q9Y4Z2 214 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 GPR45Q9Y5Y3 372 aa4.82□□□□□ -1.64
LIMA1-214ENST00000552783 ENPP3O14638 875 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 POMCP01189 267 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 C1QCP02747 245 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GPIP06744 558 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 THRBP10828 461 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PFKLP17858 780 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 EDNRBP24530 442 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GTF2E2P29084 291 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HOXA11P31270 313 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 FMO3P31513 532 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HADHAP40939 763 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 MTHFRP42898 656 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PCYT1AP49585 367 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PGFP49763 221 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 AGTR2P50052 363 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ALDH3A2P51648 485 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 DGKQP52824 942 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 MAXP61244 160 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ISL1P61371 349 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 BNIP2Q12982 314 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 SOWAHCQ53LP3 525 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HECTD2Q5U5R9 776 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 C9orf131Q5VYM1 1079 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GLYATQ6IB77 296 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF549Q6P9A3 640 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 TFAP2DQ7Z6R9 452 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PTRH1Q86Y79 214 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 C10orf111Q8N326 155 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 B3GALNT2Q8NCR0 500 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 OR13J1Q8NGT2 312 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 FBXO30Q8TB52 745 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PYCR2Q96C36 320 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 BTN2A3PQ96KV6 586 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 MRGPRX2Q96LB1 330 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 EML4Q9HC35 981 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 IL37Q9NZH6 218 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PDE10AQ9Y233 779 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 DNAH14Q0VDD8 3507 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 SMIM28A0A1B0GU29 152 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 AP3B1O00203 1094 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 AP3D1O14617 1153 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CD4P01730 458 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HLA-DQB2P05538 268 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CYP4B1P13584 511 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ADRA1AP35348 466 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ACADSBP45954 432 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HERVK_113P63132 956 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ARHGAP1Q07960 439 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 DAG1Q14118 895 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 SKIV2LQ15477 1246 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ZBTB6Q15916 424 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 DCAF4L1Q3SXM0 396 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 SV2CQ496J9 727 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 C9orf57Q5W0N0 161 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 STEAP3Q658P3 488 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 NAPEPLDQ6IQ20 393 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CLEC20AQ6ZU45 233 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 PAGE2Q7Z2X7 111 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GALNT5Q7Z7M9 940 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 TBC1D21Q8IYX1 336 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 NLGN4XQ8N0W4 816 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CLYBLQ8N0X4 340 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ZCCHC7Q8N3Z6 543 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 TERB1Q8NA31 727 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 OR6Q1Q8NGQ2 317 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GLMNQ92990 594 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CDK15Q96Q40 435 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ERVK-6Q9BXR3 956 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 CEP44Q9C0F1 390 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 SLIRPQ9GZT3 109 aaKnown RBP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 TKTL2Q9H0I9 626 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 RNF167Q9H6Y7 350 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 HMG20AQ9NP66 347 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.81□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF229Q9UJW7 825 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 FBXW11Q9UKB1 542 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 NEU3Q9UQ49 428 aa4.81□□□□□ -1.64
LIMA1-214ENST00000552783 GPSM3Q9Y4H4 160 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms