RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 KRT79Q5XKE5 535 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 FRG2Q64ET8 278 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 C8orf82Q6P1X6 216 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SDCCAG8Q86SQ7 713 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 DNAAF5Q86Y56 855 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 ARID3BQ8IVW6 561 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SCYL3Q8IZE3 742 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 BEST3Q8N1M1 668 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SYT2Q8N9I0 419 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 CSNK2A3Q8NEV1 391 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 WFIKKN2Q8TEU8 576 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 GRAMD2BQ96HH9 432 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 NUDCD1Q96RS6 583 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 KXD1Q9BQD3 176 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SPRY4Q9C004 299 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 SIL1Q9H173 461 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 TINAGQ9UJW2 476 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 MYOM1P52179 1685 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 TNS1Q9HBL0 1735 aaKnown RBP4.88□□□□□ -1.63
LIMA1-205ENST00000550592 ADGRL3Q9HAR2 1447 aa4.88□□□□□ -1.63
LIMA1-205ENST00000550592 NUP188Q5SRE5 1749 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 LOC100509620A0A075B734 347 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 A0A0U1RQJ8 604 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 H3BQ06 376 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MAP2K7O14733 419 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 EGFP01133 1207 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 CRYABP02511 175 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 HOXC6P09630 235 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MMP9P14780 707 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 RRM1P23921 792 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 LMO1P25800 156 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 BDKRB2P30411 391 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 ARRB2P32121 409 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MSH2P43246 934 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 KCNJ4P48050 445 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 STAT2P52630 851 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 HNRNPH2P55795 449 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 DSC1Q08554 894 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 EFHC1Q5JVL4 640 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 DCST1Q5T197 706 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 LCN10Q6JVE6 187 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 SLC30A6Q6NXT4 461 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 DUS1LQ6P1R4 473 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 KCTD18Q6PI47 426 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 SLC36A4Q6YBV0 504 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 KRBA2Q6ZNG9 492 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 OR1J2Q8NGS2 313 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 OR14A16Q8NHC5 309 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 HM13Q8TCT9 377 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 ADAMTS14Q8WXS8 1223 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 RND1Q92730 232 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 TXNDC15Q96J42 360 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 ZNF48Q96MX3 618 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 DACH2Q96NX9 599 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 KIFC3Q9BVG8 833 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 SF3B5Q9BWJ5 86 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MRPL1Q9BYD6 325 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 TMEM39BQ9GZU3 492 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 SEBOXQ9HB31 216 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 PSD3Q9NYI0 1048 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 PLAGL1Q9UM63 463 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MAGED1Q9Y5V3 778 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 LRPPRCP42704 1394 aaKnown RBP4.87□□□□□ -1.63
LIMA1-205ENST00000550592 FYCO1Q9BQS8 1478 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 MBD5Q9P267 1494 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 ADGRB3O60242 1522 aa4.87□□□□□ -1.63
LIMA1-205ENST00000550592 LAMC1P11047 1609 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 RREB1Q92766 1687 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CLEC18AA5D8T8 446 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GOLGA6L9A6NEM1 432 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 TCERG1O14776 1098 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 SPINT2O43291 252 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 PLRG1O43660 514 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 AVILO75366 819 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE7O76087 117 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 DDNO94850 711 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GLUD1P00367 558 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE12FP0CL80 117 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE12GP0CL81 117 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE12IP0CL82 117 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 C21orf33P30042 268 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 APOBEC1P41238 236 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 LMAN1P49257 510 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GLUD2P49448 558 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 RGS19P49795 217 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 ECT2LQ008S8 904 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CXCL9Q07325 125 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 FOXM1Q08050 763 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 SPOCK1Q08629 439 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GRSF1Q12849 480 aaKnown RBP eCLIP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 CDC16Q13042 620 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE1Q13065 139 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 GAGE4Q13068 117 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 MAD2L1Q13257 205 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 TNFAIP1Q13829 316 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 DAB2IPQ5VWQ8 1189 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 NSUN5P2Q63ZY6 315 aa4.86□□□□□ -1.63
LIMA1-205ENST00000550592 RPUSD3Q6P087 351 aaKnown RBP4.86□□□□□ -1.63
LIMA1-205ENST00000550592 AACSQ86V21 672 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms