RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ACSL3O95573 720 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 SYPP08247 313 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 GSTA2P09210 222 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 ENGP17813 658 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 OGNP20774 298 aaKnown RBP20.94■□□□□ 0.94
VPS29-206ENST00000549578 TTPAP49638 278 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 MGAT5Q09328 741 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 ITIH4Q14624 930 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 TYSND1Q2T9J0 566 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 HLA-BQ31612 363 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 RBFAQ8N0V3 343 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 CLDN19Q8N6F1 224 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 CALML6Q8TD86 181 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.94■□□□□ 0.94
VPS29-206ENST00000549578 ELF4Q99607 663 aaPredicted RBP20.94■□□□□ 0.94
VPS29-206ENST00000549578 TTC1Q99614 292 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 GTPBP2Q9BX10 602 aaKnown RBP20.94■□□□□ 0.94
VPS29-206ENST00000549578 TXLNGYQ9BZA5 131 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 ERVMER34-1Q9H9K5 563 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 CARS2Q9HA77 564 aaKnown RBP20.94■□□□□ 0.94
VPS29-206ENST00000549578 IL21RQ9HBE5 538 aa20.94■□□□□ 0.94
VPS29-206ENST00000549578 ZFHX2Q9C0A1 2572 aaPredicted RBP20.93■□□□□ 0.94
VPS29-206ENST00000549578 LNP1A1A4G5 178 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 OR2AG2A6NM03 316 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 CFAP99D6REC4 459 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 NDUFS3O75489 264 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 CSF2P04141 144 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 IVLP07476 585 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 RALBP11234 206 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 JUNDP17535 347 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 MCM3P25205 808 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 GNPDA1P46926 289 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 HK3P52790 923 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 CTSCP53634 463 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 MPP1Q00013 466 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 GTF2H3Q13889 308 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 TCEA2Q15560 299 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 TEDDM1Q5T9Z0 273 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 CRTC3Q6UUV7 619 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 PHACTR4Q8IZ21 702 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 SGF29Q96ES7 293 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 SCARF2Q96GP6 870 aaPredicted RBP20.93■□□□□ 0.94
VPS29-206ENST00000549578 ZDHHC5Q9C0B5 715 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 FBXO6Q9NRD1 293 aaPredicted RBP20.93■□□□□ 0.94
VPS29-206ENST00000549578 SMYD2Q9NRG4 433 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 ZNHIT2Q9UHR6 403 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 FBXO5Q9UKT4 447 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 RAB21Q9UL25 225 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 DGKBQ9Y6T7 804 aa20.93■□□□□ 0.94
VPS29-206ENST00000549578 EP300Q09472 2414 aaPredicted RBP20.92■□□□□ 0.94
VPS29-206ENST00000549578 SPAG6O75602 509 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 RASGRP1O95267 797 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 NME1P15531 152 aaKnown RBP20.92■□□□□ 0.94
VPS29-206ENST00000549578 PPARGP37231 505 aaPredicted RBP20.92■□□□□ 0.94
VPS29-206ENST00000549578 PMS2P54278 862 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 CSRP2Q16527 193 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 ZNF423Q2M1K9 1284 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 ZNF789Q5FWF6 425 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 IL27RAQ6UWB1 636 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 TRAPPC5Q8IUR0 188 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 CNTN4Q8IWV2 1026 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 LMNTD2Q8IXW0 634 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 FBF1Q8TES7 1133 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 HEXDCQ8WVB3 486 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 TCF12Q99081 682 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 GAREM1Q9H706 876 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 ZFATQ9P243 1243 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 PRSS21Q9Y6M0 314 aa20.92■□□□□ 0.94
VPS29-206ENST00000549578 TDRD6O60522 2096 aaKnown RBP20.91■□□□□ 0.94
VPS29-206ENST00000549578 CHUKO15111 745 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 GRID2O43424 1007 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 SGTAO43765 313 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 LRP3O75074 770 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 S1PR4O95977 384 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 TNFP01375 233 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 ATP1B2P14415 290 aaPredicted RBP20.91■□□□□ 0.94
VPS29-206ENST00000549578 TGM1P22735 817 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 NSG1P42857 185 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 IL9RQ01113 521 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 PYCR3Q53H96 274 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 TMEM220Q6QAJ8 160 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 PACS1Q6VY07 963 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 GALNT13Q8IUC8 556 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 ZNF547Q8IVP9 402 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 BEND7Q8N7W2 519 aaPredicted RBP20.91■□□□□ 0.94
VPS29-206ENST00000549578 C2CD4AQ8NCU7 369 aaPredicted RBP20.91■□□□□ 0.94
VPS29-206ENST00000549578 LPGAT1Q92604 370 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 SLC13A1Q9BZW2 595 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 RMI1Q9H9A7 625 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 TM7SF3Q9NS93 570 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 APOBEC3BQ9UH17 382 aaKnown RBP20.91■□□□□ 0.94
VPS29-206ENST00000549578 GPSM3Q9Y4H4 160 aa20.91■□□□□ 0.94
VPS29-206ENST00000549578 UBA6A0AVT1 1052 aaPredicted RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 CXorf49A8MYA2 514 aaPredicted RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 GPR89AB7ZAQ6 455 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 SDC3O75056 442 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 C1QAP02745 245 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 GPR89BP0CG08 455 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 ZNF7P17097 686 aaPredicted RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 STX2P32856 288 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms