RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 GRTP1Q5TC63 336 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 TMEM65Q6PI78 240 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ARSKQ6UWY0 536 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ZNF600Q6ZNG1 722 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ZNF767PQ75MW2 155 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PLD3Q8IV08 490 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 KIAA0319LQ8IZA0 1049 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PLD6Q8N2A8 252 aaKnown RBP9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PARP16Q8N5Y8 322 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 LINC01465Q8N7H1 131 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 C7orf31Q8N865 590 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 CHDHQ8NE62 594 aaPredicted RBP9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 FBXL13Q8NEE6 735 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 HMGCLL1Q8TB92 370 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ZFAND1Q8TCF1 268 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 KCTD4Q8WVF5 259 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PMM1Q92871 262 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 LRRC39Q96DD0 335 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 YIPF6Q96EC8 236 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 SIGLEC10Q96LC7 697 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 NODALQ96S42 347 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 EBNA1BP2Q99848 306 aaKnown RBP9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 KIFC1Q9BW19 673 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 KATNAL1Q9BW62 490 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 RSAD1Q9HA92 442 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ZC4H2Q9NQZ6 224 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 CPNE7Q9UBL6 633 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 ZDHHC2Q9UIJ5 367 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 SNX6Q9UNH7 406 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 GRIP1Q9Y3R0 1128 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PCDHB3Q9Y5E6 796 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 PCDHA11Q9Y5I1 949 aa9.4□□□□□ -0.9
CTNNA1-243ENST00000540387 COL1A2P08123 1366 aa9.4□□□□□ -0.91
CTNNA1-243ENST00000540387 PTGES3LE9PB15 166 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MRASO14807 208 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 SERPINI2O75830 405 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 PAHP00439 452 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 PRKCBP05771 671 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 APRTP07741 180 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 RFC2P35250 354 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 HAAOP46952 286 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 POLR2GP62487 172 aaKnown RBP eCLIP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ENPEPQ07075 957 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MXD4Q14582 209 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MEP1AQ16819 746 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF404Q494X3 552 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 BCL7AQ4VC05 210 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 OTUD3Q5T2D3 398 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF517Q6ZMY9 492 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 RNF180Q86T96 592 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 RFX6Q8HWS3 928 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 C8orf59Q8N0T1 100 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ACCSQ96QU6 501 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 FAM49AQ9H0Q0 323 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MMP27Q9H306 513 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM8AQ9HCN3 771 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 INTS10Q9NVR2 710 aaKnown RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 DTLQ9NZJ0 730 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 EGFL7Q9UHF1 273 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 GMEB2Q9UKD1 530 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 AKT3Q9Y243 479 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 CCDC154A6NI56 674 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 KPNA7A9QM74 516 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 K7ERI5 159 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MSCO60682 206 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 VNN1O95497 513 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 TP53P04637 393 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 PCNAP12004 261 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 FCGR1AP12314 374 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF250P15622 560 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 POU3F3P20264 500 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 AGXTP21549 392 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 DNAJB2P25686 324 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 CST5P28325 142 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 LRPAP1P30533 357 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 TAP1Q03518 808 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 EMX1Q04741 257 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 CA9Q16790 459 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 LEXMQ3ZCV2 418 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ARL13AQ5H913 290 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 TAF2Q6P1X5 1199 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 NPNTQ6UXI9 565 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 CBWD2Q8IUF1 395 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 SAMD14Q8IZD0 417 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 KIAA1958Q8N8K9 716 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 PCSK9Q8NBP7 692 aaKnown RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 DEDD2Q8WXF8 326 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 LGALS12Q96DT0 336 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 ASIC4Q96FT7 647 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 UBXN10Q96LJ8 280 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 BDH2Q9BUT1 245 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 C6orf62Q9GZU0 229 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.39□□□□□ -0.914e-11■■□□□ 12
CTNNA1-243ENST00000540387 RSPH9Q9H1X1 276 aaPredicted RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 SMOC2Q9H3U7 446 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MCCC2Q9HCC0 563 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 PRDM8Q9NQV8 689 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 DPP3Q9NY33 737 aa9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 MRPL39Q9NYK5 338 aaKnown RBP9.39□□□□□ -0.91
CTNNA1-243ENST00000540387 TMPRSS11EQ9UL52 423 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms